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ui.R
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ui.R
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library(DT)
library(shinythemes)
library(shinyBS)
library(shinyWidgets)
library(data.table)
library(tm)
library(wordcloud)
library(SnowballC)
library(htmlwidgets)
library(RColorBrewer)
Blast_Info_Title <- paste("qseqid: Query sequence ID;",
"qlen: Query sequence length;",
"sseqid: Subject sequence ID;",
"slen: Subject sequence length;",
"length: Alignment length;",
"qstart: Start of alignment in query;",
"qend: End of alignment in query;",
"sstart: Start of alignment in subject;",
"send: End of alignment in subject;",
"gaps: Number of gap openings;",
"pident: Percentage of identical matches;",
"evalue: Expect value;",
"bitscore: Bit score;",
sep = "<br>")
key.fl <- fread("key.txt", data.table = F)
footerTagList <- list(
tags$footer(id = "myFooter",
shiny::includeHTML("www/footer.html")
)
)
shinyUI(
fluidPage(
titlePanel(
title = div(
img(src = "headerN.png"),
span("funRiceGenes:", style = "font-size:36px;color:white;"),
span(
"a comprehensive database of functionally characterized rice genes", style = "font-size:28px;color:white;"
), style = "background-color:#33CCCC;margin-left: -15px;margin-right: -15px;margin-top: -20px;margin-bottom: -10px;"
), windowTitle = "Welcome to funRiceGenes!"
),
includeCSS("www/footer.css"),
navbarPage(title="", windowTitle="Welcome to funRiceGenes!",
footer = footerTagList,
## gene panel
tabPanel(HTML("<strong style='font-size:18px'>Gene</strong>"),
icon = icon("cube", class = NULL, lib = "font-awesome"),
tabsetPanel(id = "infor_gene",
tabPanel(HTML("<strong style='font-size:18px'>Search</strong>"),
fluidRow(
column(12,
radioButtons("query",
label=h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Search by a single gene symbol or a single genomic locus</font>'),
bsButton("q1", label="", icon=icon("question"), style="info", size="small")),
choices=c("MSU Locus", "RAPdb Locus", "Gene Symbol"), inline=TRUE),
bsPopover("q1", "Fill in the table cells (case insensitive) to fetch information on cloned rice genes.", trigger = "focus"),
uiOutput("inText"),
tabsetPanel(
tabPanel('Information', DT::dataTableOutput("mytable1")),
tabPanel('Reference', DT::dataTableOutput("mytable2")),
tabPanel('Accession', DT::dataTableOutput("mytable3")),
tabPanel('Expression', DT::dataTableOutput("mytable4")),
tabPanel('Keyword', DT::dataTableOutput("mytable5")),
tabPanel('Connection', DT::dataTableOutput("mytable6")),
tabPanel('RiceNet', DT::dataTableOutput("mytable13"))
)
)
)
),
tabPanel(HTML("<strong style='font-size:18px'>Submit</strong>"),
fluidRow(
column(6, h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Submit a new gene or submit new information for an existing gene</font>'),
bsButton("qq1", label="", icon=icon("question"), style="info", size="small")),
bsPopover("qq1","Note: To submit a new publication, fill in the Pubmed ID cell. To submit a new publication for an existing gene, fill in the Gene symbol and Pubmed ID cells. To submit a new gene, fill in all the four cells.",
trigger = "focus"),
wellPanel(
column(12, textInput('symsub7', strong("Gene symbol"),value="")),
column(12, textInput('msusub7', strong("MSU genomic locus"),value="")),
column(12, textInput('rapsub7', strong("RAPdb genomic locus"),value="")),
column(12, textInput('pubmed7', strong("Pubmed ID"),value="")),
column(12, passwordInput('key7', strong("Password"),value="")),
actionButton("submit7", strong("Submit"),style = "color: white; background-color: black"),
actionButton("clear1", strong("Reset"),style = "color: white; background-color: black"),
conditionalPanel(condition="input.submit7 != '0'", shinysky::busyIndicator(HTML("<p style='color:red;font-size:30px;'>Calculation In progress...</p>"), wait = 0))
)
),
column(6,
h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Edit existing gene information</font>'),
bsButton("qq2", label="", icon=icon("question"), style="info", size="small")
),
bsPopover("qq2", "Note: Fill in all the table cells to edit either of the three items: symbol, MSU and RAPdb locus.", trigger = "focus"),
wellPanel(
column(12, textInput('oldsym', strong("Old gene symbol"),value="")),
column(12, textInput('newsym', strong("New gene symbol"),value="")),
column(12, textInput('oldmsu', strong("Old MSU locus"),value="")),
column(12, textInput('newmsu', strong("New MSU locus"),value="")),
column(12, textInput('oldrap', strong("Old RAPdb locus"),value="")),
column(12, textInput('newrap', strong("New RAPdb locus"),value="")),
column(12, passwordInput('key6', strong("Password"),value="")),
actionButton("submit6", strong("Submit"),style = "color: white;background-color: black" ),
actionButton("clear2", strong("Reset"),style = "color: white;background-color: black"),
conditionalPanel(condition="input.submit6 != '0'", shinysky::busyIndicator(HTML("<p style='color:red;font-size:30px;'>Calculation In progress...</p>"), wait = 0))
)
)
)
)
)
),
## gene family panel
tabPanel(HTML("<strong style='font-size:18px'>Gene Family</strong>"),
icon = icon("cubes", class = NULL, lib = "font-awesome"),
tabsetPanel(id = "infor_genefamily",
tabPanel(HTML("<strong style='font-size:18px'>Search</strong>"),
fluidRow(
column(12,
radioButtons("queryfam", h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Search by a single gene symbol or a single genomic locus</font>'),
bsButton("q2", label="", icon=icon("question"), style="info", size="small")),
choices=c("MSU Locus", "RAPdb Locus", "Gene Symbol"), inline=TRUE),
bsPopover("q2", "Fill in the table cells (case insensitive) to fetch information on rice genes.", trigger = "focus"),
uiOutput("inTextfam"),
tabsetPanel(
tabPanel(strong('Information'), DT::dataTableOutput("mytable8")),
tabPanel('Reference', DT::dataTableOutput("mytable9"))
)
)
)
),
tabPanel(HTML("<strong style='font-size:18px'>Submit</strong>"),
fluidRow(
column(12,
h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Submit a new gene family</font>'),
bsButton("qq3", label="", icon=icon("question"), style="info", size="small")
),
bsPopover("qq3", "Note: The file Gene Family info should contain 5 columns with names Accession, Symbol, MSU,RAPdb and Name. Different columns should be separated by \t. And the 1st row should be the column names.",
trigger = "focus"),
wellPanel(
column(4, textInput('pubmed10', strong("Pubmed ID"),value="")),
column(4, passwordInput('key10', strong("Password"),value="")),
column(4, fileInput('genfamin', strong("Gene Family info"),
accept=c(".txt"))),
actionButton("submit10", strong("Submit"),style = "color: white;background-color: black"),
actionButton("clear6", strong("Reset"),style = "color: white;background-color: black"),
conditionalPanel(condition="input.submit10 != '0'", shinysky::busyIndicator(HTML("<p style='color:red;font-size:30px;'>Calculation In progress...</p>"), wait = 0))
)
)
)
)
)
),
## keyword panel
tabPanel(HTML("<strong style='font-size:18px'>Keyword</strong>"),
icon = icon("key", class = NULL, lib = "font-awesome"),
tabsetPanel(id = "infor_key",
tabPanel(HTML("<strong style='font-size:18px'>Search</strong>"),
fluidRow(
column(4,
shinyWidgets::pickerInput(
inputId = "keyword",
label = tags$div(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Search with predefined keywords</font>')),
choices = sort(unique(key.fl$Keyword)), width = "100%", selected = "nitrogen",
options = shinyWidgets::pickerOptions(
`live-search` = TRUE,
title = "Please select"
)
)
#shinyWidgets::multiInput(
# inputId = "keyword",
# label = tags$div(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Search with predefined keywords</font>')),
# choices = NULL, width="100%",
# choiceNames = unique(key.fl$Keyword),
# choiceValues = unique(key.fl$Keyword),
# selected = "nitrogen",
# options = list(
# enable_search = TRUE,# limit = 1,
# non_selected_header = "Choose from:",
# selected_header = "You have selected:"
# )
#)
),
column(8,
tabPanel('Information', DT::dataTableOutput("mytable7"))
)
)
),
tabPanel(HTML("<strong style='font-size:18px'>Submit</strong>"),
fluidRow(
column(12,
h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Submit new keywords on genes</font>')),
wellPanel(
column(2, textInput('symsub4', strong("Gene symbol"),value="")),
column(2, textInput('keysub4', strong("Keyword"),value="")),
column(2, textInput('tilsub4', strong("Title"),value="")),
column(2, textInput('evisub4', strong("Evidence"),value="")),
column(4, passwordInput('key4', strong("Password"),value="")),
actionButton("submit4", strong("Submit"),style = "color: white;background-color: black"),
actionButton("clear3", strong("Reset"),style = "color: white;background-color: black"),
conditionalPanel(condition="input.submit4 != '0'", shinysky::busyIndicator(HTML("<p style='color:red;font-size:30px;'>Calculation In progress...</p>"), wait = 0))
)
)
)
)
)
),
#BLAST
tabPanel(
HTML("<strong style='font-size:18px'>BLAST</strong>"),
icon = icon("rocket", class = NULL, lib = "font-awesome"),
h4(HTML('<i class="fa fa-circle" aria-hidden="true"></i> <font size="4" color="red"><b>Search genes collected in funRiceGenes by sequence similarity using BLAST</b></font>'),
bsButton("qBlastTitle", label="", icon=icon("question"), style="info", size="small")),
bsPopover("qBlastTitle", title = Blast_Info_Title, content = NULL, trigger = "focus"),
tabsetPanel(id = "BLAST_tab",
tabPanel("Input",
fixedRow(
column(6,
selectInput("In_blast", label = h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red"><b>Paste or upload input data?</b></font>'),
bsButton("qBlastIn", label="", icon=icon("question"), style="info", size="small")
), choices = list("Paste input data" = "paste",
"Upload input data" = "upload"),
selected = "paste"),
bsPopover("qBlastIn", "The input data must be DNA sequences or Protein sequences in fasta format.", trigger = "focus"),
conditionalPanel(condition="input.In_blast == 'paste'",
textAreaInput("BlastSeqPaste", label = h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red"><b>Input sequence</b></font>')),
value = "", resize = "vertical", height='400px', width = '200%',
placeholder = "The input sequences must be in fasta format")
),
conditionalPanel(condition="input.In_blast == 'upload'",
fileInput("BlastSeqUpload",
label = h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red"><b>Upload file</b></font>')), multiple = FALSE, width = "100%"),
downloadButton("BLAST_Input.txt", "Example BLAST input data", style = "width:100%;", class = "buttDown")
)
),
column(6,
selectInput("program_database", label = h4(HTML('<i class="fa fa-play"></i> <font size="4" color="red"><b>Database</b></font>'),
bsButton("qBLASTpdata", label="", icon=icon("question"), style="info", size="small")),
choices=c("Gene Sequence", "Protein Sequence", "CDS sequence"), width = '100%'),
bsPopover("qBLASTpdata", "Select a BLAST database to search against.",
trigger = "focus"),
textInput("BLASTev", label = h4(HTML('<i class="fa fa-play"></i> <font size="4" color="red"><b>E-value cutoff</b></font>'),
bsButton("qBLASTev", label="", icon=icon("question"), style="info", size="small")),
value = "10", placeholder = NULL, width = '100%'),
bsPopover("qBLASTev", "Set E-value threshold to filter the BLAST output.",
trigger = "focus"),
conditionalPanel(condition="input.program_database == 'Protein Sequence'",
selectInput("programpro", label = h4(HTML('<i class="fa fa-play"></i> <font size="4" color="red"><b>Program</b></font>')),
choices=c("blastp", "blastx"), width = '100%'),
),
conditionalPanel(condition="input.program_database == 'Gene Sequence'",
selectInput("programgene", label = h4(HTML('<i class="fa fa-play"></i> <font size="4" color="red"><b>Program</b></font>')),
choices=c("blastn","tblastn", "tblastx"), width = '100%'),
),
conditionalPanel(condition="input.program_database == 'CDS sequence'",
selectInput("programcds", label = h4(HTML('<i class="fa fa-play"></i> <font size="4" color="red"><b>Program</b></font>')),
choices=c("blastn","tblastn", "tblastx"), width = '100%'),
),
br(),
shinysky::actionButton("submitBLAST", strong("BLAST!",
bsButton("qBLASTGO", label="", icon=icon("question"), style="info", size="small")
), styleclass = "success"),
shinysky::actionButton("clearBLAST", strong("Reset"), styleclass = "warning"),
shinysky::actionButton("blastExam", strong("Load example"), styleclass = "info"),
conditionalPanel(condition="input.submitBLAST != '0'", shinysky::busyIndicator(HTML("<p style='color:red;font-size:30px;'>Calculation In progress...</p>"), wait = 0)),
bsPopover("qBLASTGO", "Click this button to start the BLAST alignment!",
trigger = "focus")
),
br()
)
),
tabPanel("Output",
conditionalPanel(condition="input.submitBLAST > 0",
tags$div(HTML('<i class="fa fa-circle" aria-hidden="true"></i> <font size="4" color="red"><b>BLAST output</b></font>'),
bsButton("qBLASTresultHelp", label="", icon=icon("question"), style="info", size="small")),
bsPopover("qBLASTresultHelp", title = "Click on a row to check the details of the BLAST alignment!", trigger = "focus", content = NULL)
),
br(),
DT::dataTableOutput("BLASTresult"),
fixedRow(
column(1),
column(4,
htmlOutput("Alignment"),
tableOutput("clicked"),
tags$head(tags$style("#Alignment{color: red;
font-size: 22px;
font-style: bold;
}"
)),
tags$style("#clicked{
width = 100%;
padding: 6px 12px;
white-space: pre-wrap;
height: 600px;
}"
),
),
column(6,
tags$style("#alignment{
width: 100%;
padding: 6px 12px;
white-space: pre-wrap;
height: 800px;
background: white;
}"
),
shinycssloaders::withSpinner(verbatimTextOutput("alignment", placeholder = FALSE))
)
),
column(1)
)
)
),
#Wordcloud
tabPanel(
HTML("<strong style='font-size:18px'>Annotation</strong>"),
icon = icon("cloud", class = NULL, lib = "font-awesome"),
sidebarPanel(
width = 3,
fixedRow(
column(12,
h4(HTML('<i class="fa fa-circle" aria-hidden="true"></i> <font size="4" color="red"><b>Annotation by keyword cloud</b></font>'),
bsButton("bs01", label="", icon=icon("question"), style="info", size="small")),
bsPopover("bs01", "Functional annotation of input genes by word cloud of associated keyword.", trigger = "focus")
)
),
selectInput("WordcloudDataType", h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red"><b>MSU or RAPdb gene model?</b></font>')),
choices = list("MSU gene model" = "MSU", "RAPdb gene model" = "RAPdb"), selected = "MSU"
),
selectInput("selWordcloud", h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red"><b>Paste or upload input data</b></font>'),
bsButton("bs02", label="", icon=icon("question"), style="info", size="small")),
choices = list("Paste input data" = "paste", "Upload input data" = "upload"), selected = "paste"
),
bsPopover("bs02", "Search by a list of input gene models.", trigger = "focus"),
conditionalPanel(condition="input.selWordcloud == 'paste'",
textAreaInput("WordcloudPaste", label = h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red"><b>Input genes</b></font>')),
value = "", resize = "vertical", height='200px', width = '100%',
placeholder = "One gene in one row"), value = paste(readLines("genes4wordcloud.txt"), collapse = "\n")
),
conditionalPanel(condition="input.selWordcloud == 'upload'",
fileInput("WordcloudUpload",
label = h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red"><b>Upload file</b></font>')), multiple = FALSE, width = "100%"),
),
# selectInput("wd.shape", h4(HTML('<i class="fa fa fa-play" aria-hidden="true"></i> <font size="3" color="red"><b>Wordcloud shapes</b></font>')),
# choices = c("circle", "diamond", "triangle", "triangle-forward", "pentagon", "star"), selected = "circle" ),
shinysky::actionButton("submitwd", strong("Submit!", bsButton("bs04", label="", icon=icon("question"), style="info", size="small")), styleclass = "success"),
shinysky::actionButton("keywordclear", strong("Reset"), styleclass = "warning"),
shinysky::actionButton("keywordExam", strong("Load example"), styleclass = "info"),
conditionalPanel(condition="input.submitwd != '0'", shinysky::busyIndicator(HTML("<p style='color:red;font-size:30px;'>Calculation In progress...</p>"), wait = 0)),
bsPopover("bs04", "Whenever the input genes is updated, please click Submit!", trigger = "focus")
),
mainPanel(
width = 9,
fluidRow(
column(4,
downloadButton("downloadWordcloud.pdf", "PDF-file", style = "width:100%;", class = "buttDown"),
tags$style(".buttDown{background-color:black; color: white; font-size: 16px;}")
),
column(4,
downloadButton("downloadWordcloud.png", "PNG-file", style = "width:100%;", class = "buttDown"),
tags$style(".buttDown{background-color:black; color: white; font-size: 16px;}")
),
column(4,
downloadButton("downloadWordcloud.txt", "TXT-file", style = "width:100%;", class = "buttDown"),
tags$style(".buttDown{background-color:black; color: white; font-size: 16px;}")
)
),
br(),
plotOutput("Wordcloud", width = "auto", height = "600px")
)
),
## publication panel
tabPanel(HTML("<strong style='font-size:18px'>Literature</strong>"),
icon = icon("book", class = NULL, lib = "font-awesome"),
tabsetPanel(id = "infor_public",
tabPanel( HTML("<strong style='font-size:18px'>Search</strong>"),
fluidRow(
column(12,
h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Search with any word concerning rice functional genomic studies</font>')),
textInput("publication", label = "",
value = "heading date"),
tabsetPanel(
tabPanel('Result', DT::dataTableOutput("mytable11"))
)
)
)
),
tabPanel(HTML("<strong style='font-size:18px'>Submit</strong>"),
fluidRow(
column(12,
h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Submit a new publication</font>')),
wellPanel(
column(2, textInput('symsub2', strong("Gene symbol"),value="")),
column(1, textInput('tilsub2', strong("Title"),value="")),
column(1, textInput('yearsub2', strong("Year"),value="")),
column(2, textInput('jousub2', strong("Journal"),value="")),
column(2, textInput('afisub2', strong("Affiliation"),value="")),
column(2, textInput('abssub2', strong("Abstract"),value="")),
column(2, passwordInput('key2', strong("Password"),value="")),
actionButton("submit2", strong("Submit"),style = "color: white;background-color: black"),
actionButton("clear4", strong("Reset"),style = "color: white;background-color: black"),
conditionalPanel(condition="input.submit2 != '0'", shinysky::busyIndicator(HTML("<p style='color:red;font-size:30px;'>Calculation In progress...</p>"), wait = 0))
)
)
)
)
)
),
## ID conversion panel
tabPanel(HTML("<strong style='font-size:18px'>ID Conversion</strong>"),
icon = icon("exchange", class = NULL, lib = "font-awesome"),
tabsetPanel(id = "infor_idc",
tabPanel(HTML("<strong style='font-size:18px'>Convert between MSU and RAPdb gene IDs</strong>"),
fluidRow(
column(12,
radioButtons("queryconv", h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Convert between MSU genomic locus and RAPdb genomic locus</font>'),
bsButton("q3", label="", icon=icon("question"), style="info", size="small")),
choices=c("RAPdb to MSU", "MSU to RAPdb"), inline=TRUE),
bsPopover("q3", "You can submit multiple IDs delimited by space.", trigger = "focus"),
uiOutput("inTextconv"),
tabsetPanel(
tabPanel(strong('Result'), DT::dataTableOutput("mytable10"))
)
)
)
),
tabPanel(HTML("<strong style='font-size:18px'>Convert between indica and japonica gene IDs</strong>"),
fluidRow(
column(12,
radioButtons("IJconv", h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Convert between indica and japonica gene IDs</font>'),
bsButton("q31", label="", icon=icon("question"), style="info", size="small")),
choices=c("MSU Nipponbare", "RAPdb Nipponbare", "Minghui 63", "Zhenshan 97"), inline=TRUE),
bsPopover("q31", "You can submit multiple IDs delimited by space.", trigger = "focus"),
uiOutput("inIJconv"),
tabsetPanel(
tabPanel(strong('Result'), DT::dataTableOutput("mytable12"))
)
)
)
)
)
),
## Bulk download panel
tabPanel(HTML("<strong style='font-size:18px'>Download</strong>"),
icon = icon("download", class = NULL, lib = "font-awesome"),
sidebarPanel(
selectInput("selextractdata", h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Extract data</font>'),
bsButton("bs00", label="", icon=icon("question"), style="info", size="small")
), c("Extract data using MSU genomic locus" = "1","Extract data using RAP genomic locus" = "2",
"Extract data by genomic location" = "3"), "1"),
bsPopover("bs00", 'Select extract data type',"Select how to extract the data",trigger = "focus"),
conditionalPanel(condition="input.selextractdata == '1'",
textAreaInput("msuarea", label = NULL, width="600px", resize="vertical", height="200px",
placeholder = "One locus in one row",value = "LOC_Os07g49460\nLOC_Os06g40780\nLOC_Os05g06660")
),
conditionalPanel(condition="input.selextractdata == '2'",
textAreaInput("raparea", label = NULL, width="600px", resize="vertical", height="200px",
placeholder = "One locus in one row",value = "Os02g0677300\nOs10g0528100\nOs03g0646900")
),
conditionalPanel(condition="input.selextractdata == '3'",
textInput("inGenomicReg", label = NULL, width="600px",
value = "Chr3:16413819-16913819")
),
actionButton("submit_ID", strong("Submit"), style = "color: white;background-color: black"),
actionButton("example_ID", strong("Load Example"), style = "color: white;background-color: black"),
actionButton("Clear_ID", strong("Reset"), style = "color: white;background-color: black")
),
mainPanel(
fluidRow(conditionalPanel(condition="input.selextractdata == '1'",
tabsetPanel(id = "infor_down" ,
tabPanel(strong('Gene Information'),
column(12, DT::dataTableOutput("dMsuInfo"))),
tabPanel(strong('Keyword'),
column(12, DT::dataTableOutput("dMsuKey"))),
tabPanel(strong('Publication'),
column(12, DT::dataTableOutput("dMsuPub"))),
tabPanel( strong('RiceNet'),
column(12, DT::dataTableOutput("dMsuRiceNet")))
)),
conditionalPanel(condition="input.selextractdata == '2'",
tabsetPanel(id = "infor_downor" ,
tabPanel(strong('Gene Information'),
column(12, DT::dataTableOutput("dRapInfo"))
),
tabPanel(strong('Keyword'),
column(12, DT::dataTableOutput("dRapKey"))
),
tabPanel(strong('Publication'),
column(12, DT::dataTableOutput("dRapPub"))
)
)
),
conditionalPanel(condition="input.selextractdata == '3'",
tabsetPanel(id = "infor_downreg" ,
tabPanel(strong('Gene Information'),
column(12, DT::dataTableOutput("dRegInfo"))
),
tabPanel(strong('Keyword'),
column(12, DT::dataTableOutput("dRegKey"))
),
tabPanel(strong('Publication'),
column(12, DT::dataTableOutput("dRegPub"))
)
)
)
)
)
),
## submit panel
tabPanel(HTML("<strong style='font-size:18px'>Submit</strong>"),
icon = icon("upload", class = NULL, lib = "font-awesome"),
fixedRow(
column(6,
h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Submit a new Genbank accession</font>')),
wellPanel(
column(12, textInput('symsub3', strong("Gene symbol"),value="")),
column(12, textInput('accsub3', strong("Accession"),value="")),
column(12, passwordInput('key3', strong("Password"),value="")),
actionButton("submit3", strong("Submit"),style = "color: white;background-color: black"),
actionButton("clear5", strong("Reset"),style = "color: white;background-color: black")
)
),
column(6,
h4(HTML('<i class="fa fa-play" aria-hidden="true"></i> <font size="4" color="red">Submit a new connection between genes</font>')),
wellPanel(
column(12, textInput('symsub5', strong("Gene symbol 1"),value="")),
column(12, textInput('sym2sub5', strong("Gene symbol 2"),value="")),
column(12, textInput('tilsub5', strong("Title"),value="")),
column(12, textInput('evisub5', strong("Evidence"),value="")),
column(12, passwordInput('key5', strong("Password"),value="")),
actionButton("submit5", strong("Submit"),style = "color: white;background-color: black"),
actionButton("clear7", strong("Reset"),style = "color: white;background-color: black")
)
)
)
)
), right=5, left=5
)
)