RNAseq_15killifish

This repository is a WORK IN PROGRESS

Differential expression analysis with RNAseq data from 16 species of Fundulus killifish following a salinity exposure experiment (FW, BW, transfer).

De novo transcriptome assemblies and annotations for each species are located here:

Johnson, L., & Whitehead, A. (2018, July 16). Fundulus Multispecies Osmotic Transcriptome Sequencing Project (FMOTSP). https://doi.org/10.17605/OSF.IO/M4XEG

Raw data: https://www.ncbi.nlm.nih.gov/bioproject/473009

Analysis scripts: https://github.com/johnsolk/RNAseq_15killifish

See this repository for assembly/evaluation scripts and data.