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worsica_sentinel_script_v5_inland.py
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worsica_sentinel_script_v5_inland.py
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#!/usr/bin/python3
# -*- coding: utf-8 -*-
"""
worsica script for edge detection using opencv
Author: rjmartins
Script to run all the image processing,
This does not include running the topo-bath image generation
since it is only once made and should be manually done.
Args:
>1) ZIPFILE is the imageset name located
in the same folder as this script
>2) ROI-NAME_is a region of interest name
>3) ROI-POLYGON is a string with a WKT POLYGON definition.
>4 and 5) [now deprecated] BATHYMETRY-THRESHOLD and TOPOGRAPHY-THRESHOLD are threshold
values given for bath and topography during MNDWI filtering
>6) WI_THRESHOLD is a comma separate value string that defines the threshold filtering value for each water index
>7) WATER_INDEX is a comma separate value string that defines the chosen water indexes
Usage: ./worsica_sentinel_script_v5_inland.py [ZIPFILE] [ROI-NAME] [ROI-POLYGON] [BATH] [TOPO] [MNDWI_THRESHOLD] [WATER_INDEX]
e.g: ./worsica_sentinel_script_v5_inland.py S2A_MSIL2A_20181229T113501_N0211_R080_T29SMC_20181229T124502
MARGEM-SUL "POLYGON ((-9.29732860720871 38.690406978809875,-9.351916925079804 38.690406978809875,
-9.351916925079804 38.66708931583892,-9.29732860720871 38.66708931583892,
-9.29732860720871 38.690406978809875))" -2 5 0.3,0.1,-0.2 mndwi,ndwi,ndwi2
"""
import sys
import os
import worsica_waterIndexes
import worsica_automaticThreshold
import worsica_ph5_edge_detection
import worsica_ph6_vectorization_v3
import worsica_common_script_functions
import traceback
WORKSPACE_PATH = '.'
GPT_EXEC_PATH = '/usr/local/snap/bin/gpt'
SCRIPT_PATH = '/usr/local/worsica_web_products'
def run_script(args):
'''
run all the image processing
'''
# resample
try:
print(WORKSPACE_PATH)
wis = args[6].split(',') # water indexes
thrs = args[5].split(',')
for wi, thr in zip(wis, thrs):
# wi proc
print('Processing ' + wi + ' now!')
print('---------------------------------------------')
print('-- 2) Start processing ' + wi + ' WATER INDEX')
print('---------------------------------------------')
worsica_common_script_functions.search_and_remove_files(
[WORKSPACE_PATH + '/' + args[2] + '/' + args[1] + '_' + wi + '.tif'])
worsica_waterIndexes.worsicaWaterIndexes(
WORKSPACE_PATH +
'/' +
args[2] +
'/' +
args[1] +
'.tif',
wi.upper(),
os.getcwd() +
'/' +
args[2])
print('---------------------------------------------')
print('-- 3) Apply threshold ' + str(thr) + ' on ' +
wi + ' for ' + args[2] + ' (' + args[3] + ')--')
print('---------------------------------------------')
if (thr == 'AUTO'):
print('Calculating threshold...')
thr = worsica_automaticThreshold.worsicaAutomaticThreshold(
WORKSPACE_PATH + '/' + args[2] + '/' + args[1] + '_' + wi + '.tif')
# create file
with open(WORKSPACE_PATH + '/' + args[2] + '/' + args[1] + '_' + wi + '_auto_threshold_val.txt', 'w') as f:
f.write(str(thr))
print('Finished, threshold is ' + str(thr))
worsica_common_script_functions.search_and_remove_files(
[WORKSPACE_PATH + '/' + args[2] + '/' + args[1] + '_' + wi + '_binary.tif'])
worsica_waterIndexes.worsicaApplyWaterIndexesThreshold(
WORKSPACE_PATH +
'/' +
args[2] +
'/' +
args[1] +
'_' +
wi +
'.tif',
float(thr),
os.getcwd() +
'/' +
args[2])
print('---------------------------------------------')
print('-- 4) Start ' + wi + ' edge detection for ' + args[2] + ' (' + args[3] + ')--')
print('---------------------------------------------')
worsica_common_script_functions.search_and_remove_files(
[
WORKSPACE_PATH +
'/' +
args[2] +
'/' +
args[1] +
'_' +
wi +
'_binary_closing.tif',
WORKSPACE_PATH +
'/' +
args[2] +
'/' +
args[1] +
'_' +
wi +
'_binary_closing_edge_detection.tif'])
worsica_ph5_edge_detection.run_cleanup_edge_detection_inland(
WORKSPACE_PATH + '/' + args[2] + '/' + args[1] + '_' + wi + '_binary.tif')
# vectorization
print('---------------------------------------------')
print('-- 5) Start vectorization for ' + args[2] + ' (' + args[3] + ')--')
print('---------------------------------------------')
worsica_common_script_functions.search_and_remove_files(
[
WORKSPACE_PATH +
'/' +
args[2] +
'/' +
args[1] +
'_' +
wi +
'.shp',
WORKSPACE_PATH +
'/' +
args[2] +
'/' +
args[1] +
'_' +
wi +
'.dbf',
WORKSPACE_PATH +
'/' +
args[2] +
'/' +
args[1] +
'_' +
wi +
'.shx'])
worsica_ph6_vectorization_v3.run_multiline_string_vectorization(
WORKSPACE_PATH +
'/' +
args[2] +
'/' +
args[1] +
'_' +
wi +
'.tif',
float(thr),
0,
WORKSPACE_PATH +
'/' +
args[2] +
'/' +
args[1] +
'_' +
wi +
'.shp') # white line
print('Processing ' + wi + ' done!')
print('SUCCESS!')
except BaseException:
print(traceback.format_exc())
exit(1)
if __name__ == '__main__':
if len(sys.argv) != 7:
print(
"Usage: ./worsica_sentinel_script_v5_inland.py [IMAGESET_NAME_NO_ZIP_EXTENSION] [ROI-NAME] [BATHYMETRY-THRESHOLD] [TOPOGRAPHY-THRESHOLD] [WI_THRESHOLD] [WATER_INDEX]")
exit(1)
else:
if os.path.exists(WORKSPACE_PATH + '/' + sys.argv[2] + '/' + sys.argv[1] + '.tif'):
run_script(sys.argv)
exit(0)
else:
print(
'ERROR: ' +
sys.argv[1] +
'.tif does not exist. Make sure you write the file name correctly, or check if exists.')
exit(1)