Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Can't change the prefix (-o variable) #71

Open
sztup opened this issue Oct 4, 2021 · 1 comment
Open

Can't change the prefix (-o variable) #71

sztup opened this issue Oct 4, 2021 · 1 comment

Comments

@sztup
Copy link

sztup commented Oct 4, 2021

Hi,
When I try to run Intervar, I can't change the prefix (-o variable), it is stuck at a variable used by another user of our system.
We tried to look at config files, etc, couldn't figure it out.
Maybe some temporary files were overwritten, I just can't figure out where.
If you have any idea, please share it.
Thanks,
Zsofia

@sztup
Copy link
Author

sztup commented Oct 4, 2021

We figured it out: in the python code of InterVar.py there was a line: for annovar_outfile in glob.iglob(paras['outfile']+"*."+paras['buildver']+"_multianno.txt"): so after this point the program started to work on all of the files that started with the prefix parameter defined in -o .

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant