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Compiling error with OpenFOAM 6 #55

Open
croquemadame opened this issue May 21, 2024 · 0 comments
Open

Compiling error with OpenFOAM 6 #55

croquemadame opened this issue May 21, 2024 · 0 comments

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@croquemadame
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croquemadame commented May 21, 2024 •
edited
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Hello,

I am trying to compile WENOEXT on a docker container where OpenFOAM 6 is installed. I run into the following error.

/home/openfoam/WENOEXT/libWENOEXT/WENOBase/reconstructRegionalMesh.C: In function 'Foam::autoPtr<Foam::fvMesh> Foam::reconstructRegionalMesh::reconstruct(const labelList&, const labelList&, const Foam::fvMesh&)':
/home/openfoam/WENOEXT/libWENOEXT/WENOBase/reconstructRegionalMesh.C:102:13: error: no matching function for call to 'Foam::fvMesh::fvMesh(Foam::IOobject, Foam::pointField, Foam::faceList, Foam::labelList, Foam::labelList)'
             )
             ^
In file included from /opt/openfoam6/src/finiteVolume/lnInclude/volMesh.H:42:0,
                 from /opt/openfoam6/src/finiteVolume/lnInclude/volFields.H:38,
                 from /opt/openfoam6/src/dynamicMesh/lnInclude/fvMeshAdderTemplates.C:26,
                 from /opt/openfoam6/src/dynamicMesh/lnInclude/fvMeshAdder.H:168,
                 from /home/openfoam/WENOEXT/libWENOEXT/WENOBase/reconstructRegionalMesh.H:43,
                 from /home/openfoam/WENOEXT/libWENOEXT/WENOBase/reconstructRegionalMesh.C:30:

Other info

OpenFOAM-6(715) g++ --version
g++ (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

OpenFOAM-6(716) cmake --version
cmake version 3.10.2

CMake suite maintained and supported by Kitware (kitware.com/cmake).

Please see log file attached. Any help is most welcome.

===========================================================================
       ██╗    ██╗███████╗███╗   ██╗ ██████╗     ███████╗██╗  ██╗████████╗  
       ██║    ██║██╔════╝████╗  ██║██╔═══██╗    ██╔════╝╚██╗██╔╝╚══██╔══╝  
       ██║ █╗ ██║█████╗  ██╔██╗ ██║██║   ██║    █████╗   ╚███╔╝    ██║     
       ██║███╗██║██╔══╝  ██║╚██╗██║██║   ██║    ██╔══╝   ██╔██╗    ██║     
       ╚███╔███╔╝███████╗██║ ╚████║╚██████╔╝    ███████╗██╔╝ ██╗   ██║     
        ╚══╝╚══╝ ╚══════╝╚═╝  ╚═══╝ ╚═════╝     ╚══════╝╚═╝  ╚═╝   ╚═╝     
===========================================================================
                                                                           
License                                                                    
   This file is part of WENOExt.                                           
                                                                           
   WENOExt is free software: you can redistribute it and/or modify         
   it under the terms of the GNU General Public License as published by    
   the Free Software Foundation, either version 3 of the License, or       
   (at your option) any later version.                                     
                                                                           
   WENOExt is distributed in the hope that it will be useful, but          
   WITHOUT ANY WARRANTY; without even the implied warranty of              
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.                    
   See the GNU General Public License for more details.                    
                                                                           
   You should have received a copy of the GNU General Public License       
   along with  WENOExt.  If not, see <http://www.gnu.org/licenses/>.       
===========================================================================
                                                                           
Build with these options:                                                  
Parallel:        YES                                               
Number of cores: 4                                              
                                                                           
===========================================================================
                        Start CMake Process                                
===========================================================================
-- The C compiler identification is GNU 7.4.0
-- The CXX compiler identification is GNU 7.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done

-------------------------------------------------------------------
	Generate WENO code rules for OpenFOAM version 6
-------------------------------------------------------------------
OF_VERSION: 6

-------------------------------------------------------------------
	Set blaze cache size
-------------------------------------------------------------------
Cache size is automatically set if not provided by the user with
	cmake ../ -DBLAZE_CACHE_SIZE=<Cache Size>
Automatic Cache Size Configuration
CMake Warning at blaze-3.8/CMakeLists.txt:75 (message):
  Cache size not found automatically.  Using default value as cache size.


Configuring Cache Size : 3145728UL
-------------------------------------------------------------------

-------------------------------------------------------------------
	Build State
-------------------------------------------------------------------
Built state is: unspecified
Building tests
This can be deactivated by using CMAKE_BUILD_TYPE=Release
-------------------------------------------------------------------

-- Configuring done
-- Generating done
-- Build files have been written to: /home/openfoam/WENOEXT/build
Scanning dependencies of target KDTree
[  1%] Building CXX object tests/src/KDTree/CMakeFiles/KDTree.dir/KDTree.cpp.o
[  2%] Linking CXX static library libKDTree.a
[  2%] Built target KDTree
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[  3%] Building CXX object tests/src/vtkWriter/CMakeFiles/vtkWriter.dir/vtkWriter.C.o
Scanning dependencies of target Catch2
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[  8%] Linking CXX static library libvtkWriter.a
[  8%] Built target vtkWriter
[  9%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_cumulative_base.cpp.o
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[ 52%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/catch_session.cpp.o
[ 53%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/internal/catch_singletons.cpp.o
[ 54%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/internal/catch_stream.cpp.o
[ 55%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/internal/catch_stringref.cpp.o
[ 56%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/internal/catch_string_manip.cpp.o
[ 57%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/internal/catch_tag_alias_registry.cpp.o
[ 58%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/catch_test_case_info.cpp.o
[ 59%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/internal/catch_test_case_registry_impl.cpp.o
[ 60%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/internal/catch_test_case_tracker.cpp.o
[ 61%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/internal/catch_test_registry.cpp.o
[ 62%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/internal/catch_textflow.cpp.o
[ 63%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/catch_test_spec.cpp.o
[ 64%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/internal/catch_test_spec_parser.cpp.o
[ 65%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/catch_timer.cpp.o
[ 66%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/catch_tostring.cpp.o
[ 67%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/catch_totals.cpp.o
[ 68%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/catch_version.cpp.o
[ 69%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/internal/catch_wildcard_pattern.cpp.o
Scanning dependencies of target WENOEXT
[ 70%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/internal/catch_xmlwriter.cpp.o
[ 71%] Building CXX object libWENOEXT/CMakeFiles/WENOEXT.dir/BlazeIO/BlazeIO.C.o
[ 72%] Building CXX object libWENOEXT/CMakeFiles/WENOEXT.dir/WENOBase/geometryWENO/geometryWENO.C.o
[ 73%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/internal/catch_benchmark_combined_tu.cpp.o
[ 74%] Building CXX object libWENOEXT/CMakeFiles/WENOEXT.dir/WENOBase/WENOBase.C.o
[ 75%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_stats.cpp.o
[ 76%] Linking CXX static library libCatch2.a
[ 76%] Built target Catch2
[ 77%] Building CXX object libWENOEXT/CMakeFiles/WENOEXT.dir/WENOBase/globalfvMesh.C.o
Scanning dependencies of target Catch2WithMain
[ 78%] Building CXX object tests/Catch2/src/CMakeFiles/Catch2WithMain.dir/catch2/internal/catch_main.cpp.o
[ 79%] Building CXX object libWENOEXT/CMakeFiles/WENOEXT.dir/WENOBase/matrixDB.C.o
In file included from /home/openfoam/WENOEXT/libWENOEXT/WENOBase/geometryWENO/mathFunctionsWENO.H:40:0,
                 from /home/openfoam/WENOEXT/libWENOEXT/WENOBase/geometryWENO/geometryWENO.C:32:
/home/openfoam/WENOEXT/libWENOEXT/WENOBase/geometryWENO/realEigenValues.H: In member function 'void Foam::mathFunctionsWENO::realEigenValues::hqr()':
/home/openfoam/WENOEXT/libWENOEXT/WENOBase/geometryWENO/realEigenValues.H:338:34: warning: 'q' may be used uninitialized in this function [-Wmaybe-uninitialized]
       if ((s=sign(std::sqrt(p*p+q*q+r*r),p)) != 0.0) 
                                 ~^~
/home/openfoam/WENOEXT/libWENOEXT/WENOBase/geometryWENO/realEigenValues.H:338:38: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
       if ((s=sign(std::sqrt(p*p+q*q+r*r),p)) != 0.0) 
                                     ~^~
[ 80%] Linking CXX static library libCatch2Main.a
[ 80%] Built target Catch2WithMain
[ 81%] Building CXX object libWENOEXT/CMakeFiles/WENOEXT.dir/WENOBase/reconstructRegionalMesh.C.o
[ 82%] Building CXX object libWENOEXT/CMakeFiles/WENOEXT.dir/WENOUpwindFit/makeWENOUpwindFit.C.o
/home/openfoam/WENOEXT/libWENOEXT/WENOBase/reconstructRegionalMesh.C: In function 'Foam::autoPtr<Foam::fvMesh> Foam::reconstructRegionalMesh::reconstruct(const labelList&, const labelList&, const Foam::fvMesh&)':
/home/openfoam/WENOEXT/libWENOEXT/WENOBase/reconstructRegionalMesh.C:102:13: error: no matching function for call to 'Foam::fvMesh::fvMesh(Foam::IOobject, Foam::pointField, Foam::faceList, Foam::labelList, Foam::labelList)'
             )
             ^
In file included from /opt/openfoam6/src/finiteVolume/lnInclude/volMesh.H:42:0,
                 from /opt/openfoam6/src/finiteVolume/lnInclude/volFields.H:38,
                 from /opt/openfoam6/src/dynamicMesh/lnInclude/fvMeshAdderTemplates.C:26,
                 from /opt/openfoam6/src/dynamicMesh/lnInclude/fvMeshAdder.H:168,
                 from /home/openfoam/WENOEXT/libWENOEXT/WENOBase/reconstructRegionalMesh.H:43,
                 from /home/openfoam/WENOEXT/libWENOEXT/WENOBase/reconstructRegionalMesh.C:30:
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:211:9: note: candidate: Foam::fvMesh::fvMesh(const Foam::IOobject&, const Foam::Xfer<Foam::Field<Foam::Vector<double> > >&, const Foam::Xfer<Foam::List<Foam::face> >&, const Foam::Xfer<Foam::List<Foam::cell> >&, bool)
         fvMesh
         ^~~~~~
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:211:9: note:   no known conversion for argument 2 from 'Foam::pointField {aka Foam::Field<Foam::Vector<double> >}' to 'const Foam::Xfer<Foam::Field<Foam::Vector<double> > >&'
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:199:9: note: candidate: Foam::fvMesh::fvMesh(const Foam::IOobject&, const Foam::Xfer<Foam::Field<Foam::Vector<double> > >&, const Foam::Xfer<Foam::List<Foam::face> >&, const Foam::Xfer<Foam::List<int> >&, const Foam::Xfer<Foam::List<int> >&, bool)
         fvMesh
         ^~~~~~
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:199:9: note:   no known conversion for argument 2 from 'Foam::pointField {aka Foam::Field<Foam::Vector<double> >}' to 'const Foam::Xfer<Foam::Field<Foam::Vector<double> > >&'
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:184:9: note: candidate: Foam::fvMesh::fvMesh(const Foam::IOobject&, const Foam::Xfer<Foam::Field<Foam::Vector<double> > >&, const cellShapeList&, const faceListList&, const wordList&, const Foam::PtrList<Foam::dictionary>&, const Foam::word&, const Foam::word&, bool)
         fvMesh
         ^~~~~~
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:184:9: note:   candidate expects 9 arguments, 5 provided
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:181:18: note: candidate: Foam::fvMesh::fvMesh(const Foam::IOobject&)
         explicit fvMesh(const IOobject& io);
                  ^~~~~~
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:181:18: note:   candidate expects 1 argument, 5 provided
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:160:9: note: candidate: Foam::fvMesh::fvMesh(const Foam::fvMesh&)
         fvMesh(const fvMesh&);
         ^~~~~~
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:160:9: note:   candidate expects 1 argument, 5 provided
/home/openfoam/WENOEXT/libWENOEXT/WENOBase/reconstructRegionalMesh.C:134:9: error: no matching function for call to 'Foam::fvMesh::fvMesh(Foam::IOobject, std::remove_reference<Foam::Field<Foam::Vector<double> >&>::type, std::remove_reference<Foam::List<Foam::face>&>::type, std::remove_reference<Foam::List<int>&>::type, std::remove_reference<Foam::List<int>&>::type, bool)'
         );
         ^
In file included from /opt/openfoam6/src/finiteVolume/lnInclude/volMesh.H:42:0,
                 from /opt/openfoam6/src/finiteVolume/lnInclude/volFields.H:38,
                 from /opt/openfoam6/src/dynamicMesh/lnInclude/fvMeshAdderTemplates.C:26,
                 from /opt/openfoam6/src/dynamicMesh/lnInclude/fvMeshAdder.H:168,
                 from /home/openfoam/WENOEXT/libWENOEXT/WENOBase/reconstructRegionalMesh.H:43,
                 from /home/openfoam/WENOEXT/libWENOEXT/WENOBase/reconstructRegionalMesh.C:30:
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:211:9: note: candidate: Foam::fvMesh::fvMesh(const Foam::IOobject&, const Foam::Xfer<Foam::Field<Foam::Vector<double> > >&, const Foam::Xfer<Foam::List<Foam::face> >&, const Foam::Xfer<Foam::List<Foam::cell> >&, bool)
         fvMesh
         ^~~~~~
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:211:9: note:   candidate expects 5 arguments, 6 provided
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:199:9: note: candidate: Foam::fvMesh::fvMesh(const Foam::IOobject&, const Foam::Xfer<Foam::Field<Foam::Vector<double> > >&, const Foam::Xfer<Foam::List<Foam::face> >&, const Foam::Xfer<Foam::List<int> >&, const Foam::Xfer<Foam::List<int> >&, bool)
         fvMesh
         ^~~~~~
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:199:9: note:   no known conversion for argument 2 from 'std::remove_reference<Foam::Field<Foam::Vector<double> >&>::type {aka Foam::Field<Foam::Vector<double> >}' to 'const Foam::Xfer<Foam::Field<Foam::Vector<double> > >&'
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:184:9: note: candidate: Foam::fvMesh::fvMesh(const Foam::IOobject&, const Foam::Xfer<Foam::Field<Foam::Vector<double> > >&, const cellShapeList&, const faceListList&, const wordList&, const Foam::PtrList<Foam::dictionary>&, const Foam::word&, const Foam::word&, bool)
         fvMesh
         ^~~~~~
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:184:9: note:   candidate expects 9 arguments, 6 provided
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:181:18: note: candidate: Foam::fvMesh::fvMesh(const Foam::IOobject&)
         explicit fvMesh(const IOobject& io);
                  ^~~~~~
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:181:18: note:   candidate expects 1 argument, 6 provided
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:160:9: note: candidate: Foam::fvMesh::fvMesh(const Foam::fvMesh&)
         fvMesh(const fvMesh&);
         ^~~~~~
/opt/openfoam6/src/finiteVolume/lnInclude/fvMesh.H:160:9: note:   candidate expects 1 argument, 6 provided
libWENOEXT/CMakeFiles/WENOEXT.dir/build.make:182: recipe for target 'libWENOEXT/CMakeFiles/WENOEXT.dir/WENOBase/reconstructRegionalMesh.C.o' failed
make[2]: *** [libWENOEXT/CMakeFiles/WENOEXT.dir/WENOBase/reconstructRegionalMesh.C.o] Error 1
make[2]: *** Waiting for unfinished jobs....
/home/openfoam/WENOEXT/libWENOEXT/WENOBase/matrixDB.C: In member function 'Foam::matrixDB::iterType Foam::matrixDB::similar(const scalarRectangularMatrix&&)':
/home/openfoam/WENOEXT/libWENOEXT/WENOBase/matrixDB.C:120:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (blaze::size(cmpA) == A.size())
             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
CMakeFiles/Makefile2:103: recipe for target 'libWENOEXT/CMakeFiles/WENOEXT.dir/all' failed
make[1]: *** [libWENOEXT/CMakeFiles/WENOEXT.dir/all] Error 2
Makefile:129: recipe for target 'all' failed
make: *** [all] Error 2

Edit: pasted contents of log file
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