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3D nuclei overlapping 2D atlas slice using Qui2018 atlas #748

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kimiline opened this issue Oct 8, 2024 · 1 comment
Open

3D nuclei overlapping 2D atlas slice using Qui2018 atlas #748

kimiline opened this issue Oct 8, 2024 · 1 comment
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@kimiline
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kimiline commented Oct 8, 2024

Describe the bug
On the web version of Pinpoint, using the Qui2018 atlas, in plane slice, and entering a target nucleus (which shows up in 3D), the 3D slice overlaps with the nucleus above it shown in the in plane slice.

To Reproduce
Steps to reproduce the behavior:

  1. open web-based pinpoint, load Qui2018 atlas, select in plane slice.
  2. list target region (LP for example below), target with a probe
  3. rotate and zoom in to see that LP (in 3D) is overlapping with DG, note that 3D version of CP overlaps with 2D version of MOp too.

Screenshots
Screenshot 2024-10-08 151505

Log
After re-creating the bug in your build of Pinpoint, please find and attach the Player.log file. This has important debugging information that we need to fix issues.

On Windows the Player.log file is located at: %USERPROFILE%\AppData\LocalLow\VirtualBrainLab\Pinpoint\Player.log
On Linux: ~/.config/unity3d/VirtualBrainLab/Pinpoint/Player.log
In a browser the Player.log file is written to the console. Please copy and paste the entire contents of the console into your issue, or into a file attached to your issue. To access the console:

In Firefox, press Ctrl-Shift-K on Windows or Command-Option-K on a Mac.
In Chrome, press Ctrl-Shift-J on Windows or Command-Option-J on a Mac.
In Safari, go to Preferences > Advanced > Develop, and press Command-Option-C.
In Microsoft Edge or Internet Explorer, press F12.

I am unable to locate the player.log file in chrome using the directions above, sorry!

@kimiline kimiline added the bug Something isn't working label Oct 8, 2024
@dbirman
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dbirman commented Oct 11, 2024

Hmm this is weird, I wonder if this is an issue with the order that the atlases load and warp the meshes. Anyways I'll take a look thanks for reporting!

@dbirman dbirman added this to the v1.2.X milestone Oct 11, 2024
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