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Secondary structure with MC-annotate #41

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mandar5335 opened this issue Feb 22, 2022 · 0 comments
Open

Secondary structure with MC-annotate #41

mandar5335 opened this issue Feb 22, 2022 · 0 comments

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@mandar5335
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Hi,

I used rnaConvert.py to get secondary structure with

rnaConvert.py -T fasta 5nwq_A.pdb --pdb-annotation-tool MC-Annotate

The predicted SS is without pseudoknot base pairing, is it expected behavior for pseudoknot structures?

>5nwq_A
CCGGACGAGGUGCGCCGUACCCGGUCAGGACAAGACGGCGC
...........(((((((................)))))))

Best,
Mandar Kulkarni
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