From c79dc4af5d79aee4d77fbe777e3ce58f6dff9489 Mon Sep 17 00:00:00 2001 From: guo-seu <74687791+guo-seu@users.noreply.github.com> Date: Thu, 5 Aug 2021 14:41:17 +0800 Subject: [PATCH] Add files via upload --- hackathon/SGuo/imPreProcess/README.md | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) diff --git a/hackathon/SGuo/imPreProcess/README.md b/hackathon/SGuo/imPreProcess/README.md index 8600581b4..540c310bc 100644 --- a/hackathon/SGuo/imPreProcess/README.md +++ b/hackathon/SGuo/imPreProcess/README.md @@ -2,7 +2,7 @@ imPreProcess is a Vaa3D plugin including a pipeline of image enhancement for single-neuron images. The aims is to enhance the neurite signal as well as to suppress the background, with the ultimate goal of high signal-background contrast and better within- and between image homogeneity. -Please cite the following manuscript for CMO analysis: +Please cite the following manuscript to use this plugin: > Guo et al. Image enhancement to leverage the 3D morphological reconstruction of single-cell neurons. Bioinformatics. @@ -35,16 +35,13 @@ In this repo, we provide the following sources. * Window-based: vaa3d_msvc.exe /x path_of_plugin_dll /f im_enhancement /i imput_image /o output_image /p parameter_list - * Linux/Mac-based: vaa3d -x path_of_plugin_so -f im_enhancement -i imput_image -o output_image -p parameter_list ## Command-line parameters * input_image: 3d image to be enhanced (supported formats: .tif, .raw, .v3draw) - * output_image: where to save the enhanced image (supported formats: .tif, .raw, .v3draw) - * parameter_list: value of differet parameters, separated by space. Details are given as following @@ -68,7 +65,6 @@ In this repo, we provide the following sources. If you have questions, please check the documentations on the Vaa3D website: http://vaa3d.org, and the wiki pages: https://github.com/Vaa3D/Vaa3D_Wiki/wiki/. - You could find answers of FAQs and submmit your questions using the following help forum: https://www.nitrc.org/forum/forum.php?forum_id=1553.