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docs: Update references to bdi-viz
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roquelopez committed Oct 21, 2024
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2 changes: 1 addition & 1 deletion README.md
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# bdi-kit

The `bdi-kit` is a library that assist users in performing data harmonization. It provides state-of-the-art tools to streamline the process of integrating and transforming disparate datasets (with a focus on biomedical data), and includes APIs and visualizations for peforming tasks such as:
The `bdi-kit` is a library that assist users in performing data harmonization. It provides state-of-the-art tools to streamline the process of integrating and transforming disparate datasets (with a focus on biomedical data), and includes APIs for performing tasks such as:
- Schema matching
- Value matching
- Data transformation to a target schema/standard
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3 changes: 1 addition & 2 deletions docs/source/examples.rst
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Here can find different Jupyter notebook examples about how to use `bdi-kit`:

- `Analyzing one attribute/column at a time <https://github.com/VIDA-NYU/bdi-kit/blob/devel/examples/analyzing_one_attribute.ipynb>`__
- `Changing the parameters of the matching methods <https://github.com/VIDA-NYU/bdi-kit/blob/devel/examples/changing_parameters.ipynb>`__
- `Exploring schema and value matching through a visualization tool <https://github.com/VIDA-NYU/bdi-kit/blob/devel/examples/schema_matching_heatmap.ipynb>`__
- `Changing the parameters of the matching methods <https://github.com/VIDA-NYU/bdi-kit/blob/devel/examples/changing_parameters.ipynb>`__
2 changes: 1 addition & 1 deletion docs/source/index.rst
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Expand Up @@ -4,7 +4,7 @@ Overview
The bdi-kit is a library that assist users in performing data harmonization.
It provides state-of-the-art tools to streamline the process of integrating and
transforming disparate datasets (with a focus on biomedical data), and includes
APIs and visualizations for peforming tasks such as:
APIs for performing tasks such as:

- Schema matching
- Value matching
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2 changes: 1 addition & 1 deletion examples/getting-started.ipynb
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"### Verifying the schema mappings\n",
"\n",
"Sometimes the mappings generated automatically may be incorrect or you may to want verify them individually.\n",
"To verify the suggested column mappings, `bdi-kit` offers additional APIs to visualize the data and make any modifications when necessary. \n",
"To verify the suggested column mappings, you can use `bdi-kit` and [bdi-viz](https://github.com/VIDA-NYU/bdi-viz), which offers additional APIs to visualize the data and make any modifications when necessary. \n",
"\n",
"For this example, we will use the column `Histologic_type`. We can start by exploring the columns most similar to `Histologic_type`. \n",
"\n",
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