R-CMD-check.yaml

# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on:
  push:
    branches:
      - main
      - master
  pull_request:
    branches:
      - main
      - master

name: R-CMD-check
env:
  cache-version: v6

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: windows-latest, r: '4.3'}
          - {os: windows-latest, r: '4.4'}
          #- {os: windows-latest, r: '3.6', rspm: "https://packagemanager.rstudio.com/cran/latest"}
          - {os: macOS-latest, r: '4.3'}
          - {os: macOS-latest, r: '4.4'}
          #- {os: ubuntu-22.04, r: '4.3', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
          - {os: ubuntu-22.04,   r: '4.4', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest", http-user-agent: "R/4.3.0 (ubuntu-22.04) R (4.3.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }
          #- {os: ubuntu-20.04, r: '4.3', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
          - {os: ubuntu-20.04,   r: '4.4', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", http-user-agent: "R/4.3.0 (ubuntu-20.04) R (4.3.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }
          #- {os: ubuntu-18.04,   r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
          # - {os: ubuntu-18.04,   r: '3.6',     rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

    steps:
      - uses: actions/checkout@v4

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}

      - uses: r-lib/actions/setup-pandoc@v2

      - name: Query dependencies
        run: |
          install.packages('remotes')
          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      - name: Restore R package cache
        uses: actions/cache@v4
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ env.cache-version }}-${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          while read -r cmd
          do
            eval sudo $cmd
          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "22.04"))')

      - name: INLA system requirements not detected previously
        if: runner.os == 'Linux'
        run: |
          sudo apt-get install -y libudunits2-dev libgdal-dev gdal-bin libgeos-dev libproj-dev libsqlite3-dev libjpeg-dev libfribidi-dev libharfbuzz-dev libtiff-dev libgit2-dev libgsl0-dev libglu1-mesa-dev libgl1-mesa-dev

      - name: Install INLA on Windows
        if: runner.os == 'Windows'
        run: |
          install.packages("INLA", repos = c(getOption("repos"), INLA = "https://inla.r-inla-download.org/R/stable"), dep = TRUE, type = "binary")
        shell: Rscript {0}

      - name: Install dependencies
        run: |
          options(install.packages.check.source = "no")
          remotes::install_deps(dependencies = TRUE)
          remotes::install_cran("rcmdcheck")
        shell: Rscript {0}

      - name: Check
        env:
          _R_CHECK_CRAN_INCOMING_REMOTE_: false
        run: |
          options(crayon.enabled = TRUE)
          rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
        shell: Rscript {0}

      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@main
        with:
          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
          path: check