diff --git a/man/read_nm_files.Rd b/man/read_nm_files.Rd
index 9ec71143..0e9586c9 100755
--- a/man/read_nm_files.Rd
+++ b/man/read_nm_files.Rd
@@ -33,11 +33,11 @@ Quickly import NONMEM output files into R.
}
\section{File path generation}{
The rules for model file names generation are
- as follow: \itemize{
+ as follow: \itemize{
\item with \code{runno}: the full path is generated as
\code{
/.} e.g. with \code{dir = 'model/pk'},
\code{prefix = 'run'}, \code{runno = '001'}, \code{ext = '.lst'} the
- resulting path would be \code{model/pk/run001.lst}
+ resulting path would be \code{model/pk/run001.lst}
\item with \code{file}:
the full path is generated as \code{/} e.g. with \code{dir =
'model/pk'}, \code{file = 'run001.lst'} the resulting path would also be
diff --git a/man/read_nm_model.Rd b/man/read_nm_model.Rd
index 7c727961..3a3ff64c 100755
--- a/man/read_nm_model.Rd
+++ b/man/read_nm_model.Rd
@@ -9,7 +9,8 @@ read_nm_model(
prefix = "run",
ext = ".lst",
file = NULL,
- dir = NULL
+ dir = NULL,
+ check_ext = TRUE
)
}
\arguments{
@@ -19,7 +20,7 @@ combination with \code{prefix} and \code{ext}.}
\item{prefix}{Prefix to be used to generate model file name. Used in
combination with \code{runno} and \code{ext}.}
-\item{ext}{Extension to be used to generate model file name.Should be one of
+\item{ext}{Extension to be used to generate model file name. Should be one of
'.lst' (default), '.out', '.res', '.mod' or '.ctl' for NONMEM.}
\item{file}{Model file name (preferably a '.lst' file) containing the file
@@ -27,6 +28,11 @@ extension. Alternative to \code{prefix}, \code{runno} and \code{ext}
arguments.}
\item{dir}{Location of the model files.}
+
+\item{check_ext}{Logical, if \code{TRUE} will provide an error message if the
+extension of the NONMEM input file is not one of '.lst', '.out', '.res',
+'.mod' or '.ctl' for NONMEM. If \code {FALSE} any file extension can be
+used.}
}
\value{
A \code{\link[dplyr]{tibble}} of class \code{model} containing the following columns:
@@ -53,11 +59,11 @@ associated with run001.mod.
}
\section{File path generation}{
The rules for model file names generation are
- as follow: \itemize{
+ as follow: \itemize{
\item with \code{runno}: the full path is generated as
\code{/.} e.g. with \code{dir = 'model/pk'},
\code{prefix = 'run'}, \code{runno = '001'}, \code{ext = '.lst'} the
- resulting path would be \code{model/pk/run001.lst}
+ resulting path would be \code{model/pk/run001.lst}
\item with \code{file}:
the full path is generated as \code{/} e.g. with \code{dir =
'model/pk'}, \code{file = 'run001.lst'} the resulting path would also be
diff --git a/man/xpose_data.Rd b/man/xpose_data.Rd
index 8d8e9bf8..21014946 100755
--- a/man/xpose_data.Rd
+++ b/man/xpose_data.Rd
@@ -15,6 +15,7 @@ xpose_data(
simtab = NULL,
manual_import = NULL,
ignore = NULL,
+ check_ext = TRUE,
extra_files,
quiet,
...
@@ -27,7 +28,7 @@ combination with \code{prefix} and \code{ext}.}
\item{prefix}{Prefix to be used to generate model file name. Used in
combination with \code{runno} and \code{ext}.}
-\item{ext}{Extension to be used to generate model file name.Should be one of
+\item{ext}{Extension to be used to generate model file name. Should be one of
'.lst' (default), '.out', '.res', '.mod' or '.ctl' for NONMEM.}
\item{file}{Model file name (preferably a '.lst' file) containing the file
@@ -55,8 +56,13 @@ in previous versions of xpose, the check the function
\item{ignore}{Character vector be used to ignore the import/generation of:
'data', 'files', 'summary' or any combination of the three.}
+\item{check_ext}{Logical, if \code{TRUE} will provide an error message if the
+extension of the NONMEM input file is not one of '.lst', '.out', '.res',
+'.mod' or '.ctl' for NONMEM. If \code {FALSE} any file extension can be
+used.}
+
\item{extra_files}{A vector of additional output file extensions to be
-imported. Default is '.ext', '.cov', '.cor', '.phi', ".grd" for NONMEM.}
+imported. Default is '.ext', '.cov', '.cor', '.phi', '.grd' for NONMEM.}
\item{quiet}{Logical, if \code{FALSE} messages are printed to the console.}
@@ -68,11 +74,11 @@ Gather model outputs into a R database
}
\section{File path generation}{
The rules for model file names generation are
- as follow: \itemize{
+ as follow: \itemize{
\item with \code{runno}: the full path is generated as
\code{/.} e.g. with \code{dir = 'model/pk'},
\code{prefix = 'run'}, \code{runno = '001'}, \code{ext = '.lst'} the
- resulting path would be \code{model/pk/run001.lst}
+ resulting path would be \code{model/pk/run001.lst}
\item with \code{file}:
the full path is generated as \code{/} e.g. with \code{dir =
'model/pk'}, \code{file = 'run001.lst'} the resulting path would also be