Error messages from the qa tool when using one of its tests

[olofsen]

Having installed version 5.5.0 by correcting the version number in tool/PsN.pm from the repository, adding the accompanying PsNR and pharmpy sources, and making a release, next using the latest R packages to avoid error messages concerning DLLs, I tried testing the installation in the "test_files" directory using "qa -cont=APGR,WGT pheno_real.mod -pdf". (Note that "prove -r system" passed).

This led to incomplete results, indicated by two error message sequences ending in

• lin_path = list(path.glob('*_linbase.mod'))[0]

and, from the frem step

• with open(path / 'meta.yaml') as meta:

It seems that the first one can be corrected by replacing "glob" by "rglob" in "pyvenv/lib/python3.12/site-packages/pharmpy/tools/linearize/results.py"; and the second by looking in "path / 'meta.yaml'" but also in "path / '../meta.yaml'" in "pyvenv/lib/python3.12/site-packages/pharmpy/tools/linearize/psn_helpers.py". So possibly the tools are sometimes confused about the location of their files when run from qa.