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Add in exact radii and normalized radii methods #257

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lcgraham opened this issue Jul 22, 2016 · 2 comments
Open

Add in exact radii and normalized radii methods #257

lcgraham opened this issue Jul 22, 2016 · 2 comments
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@lcgraham
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Use scipy.spatial.Delaunay to determine neighboring cells. Then determine distance to the furthest neighbor. See bet.calculateP.calculateError for hints/guidance. Make sure that we use radii as a cutoff in query for local volume emulation.

lcgraham added a commit to lcgraham/BET that referenced this issue Jul 27, 2016
@lcgraham lcgraham self-assigned this Jul 28, 2016
@lcgraham
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lcgraham commented Aug 3, 2016

Use kdtree to find/do the connectivity to estimate/determine neighboring cells.

  1. For all emulated points in cell get the 2 nearest neighbors.
  2. The set of second nearest neighbors for all emulated points included in a cell are the neighboring cells. Then we calculate the distances/radii exactly from this. (The might be possible without the emulated points.) This is an approximate connectivity.

@smattis This is a summary from yesterday's discussion and might impact the calculateError sub package.

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lcgraham commented Aug 8, 2016

Needs more work to take into account bounded domain...

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