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remake.yml
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remake.yml
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include:
- 1_spatial.yml
- 2_observations.yml
- 3_config.yml
- 4_inputs.yml
- 5_predictions.yml
packages:
- yaml
- dplyr
- tidyr
- meddle # at least v0.0.12
- readr
- feather
- rgdal
- stringr
- sf
- sbtools
- dssecrets
- scipiper
- tidyverse
sources:
#- src/spatial_utils.R
- src/sb_functions.R
targets:
all:
depends:
- 00_parent_sb_xml
- 01_spatial_sb_xml
- 01_spatial_sb_shp
- 02_observations_sb_data
- 02_observations_sb_xml
- 03_config_sb_xml
- 03_config_sb_data
- 04_inputs_sb_xml
- 04_inputs_sb_data
- 04_inputs_sb_meteo
- 05_predictions_sb_xml
- 05_predictions_sb_data
# in case you want to mess w/ the xml alone:
out_xml/00_parent.xml:
command: render(filename = target_name,
"in_text/text_SHARED.yml",
"in_text/text_00_parent.yml",
river_metadata2)
00_parent_sb_xml:
command: sb_render_post_xml(sbid_00_parent,
xml_file = I('00_parent.xml'),
"in_text/text_SHARED.yml",
"in_text/text_00_parent.yml",
river_metadata2)
01_spatial_sb_xml:
command: sb_render_post_xml(sbid_01_spatial,
xml_file = I('01_spatial.xml'),
"in_text/text_SHARED.yml",
"in_text/text_01_spatial.yml",
river_metadata2)
out_xml/01_spatial_fgdc_metadata.xml:
command: render(filename = target_name,
"in_text/text_SHARED.yml",
"in_text/text_01_spatial.yml",
river_metadata2)
01_spatial_sb_shp:
command: sb_replace_files(sbid_01_spatial,
"out_data/study_stream_reaches.zip",
"out_data/study_reservoirs.zip",
"out_data/study_monitoring_sites.zip")
02_observations_sb_xml:
command: sb_render_post_xml(sbid_02_observations,
xml_file = I('02_observations.xml'),
"in_text/text_SHARED.yml",
"in_text/text_02_observations.yml",
river_metadata2)
out_xml/02_observations_fgdc_metadata.xml:
command: render(filename = target_name,
"in_text/text_SHARED.yml",
"in_text/text_02_observations.yml",
river_metadata2)
02_observations_sb_data:
command: sb_replace_files(sbid_02_observations,
"out_data/temperature_observations_drb.zip",
"out_data/temperature_observations_lordville.zip",
"out_data/temperature_observations_forecast_sites.zip",
"out_data/flow_observations_drb.zip",
"out_data/flow_observations_lordville.zip",
"out_data/flow_observations_forecast_sites.zip",
"out_data/reservoir_releases_total.csv",
"out_data/reservoir_releases_by_type_drb.csv",
"out_data/reservoir_releases_by_type_lordville.csv",
"out_data/reservoir_realsat_monthly_surface_area.csv",
"out_data/reservoir_io_obs.csv",
"out_data/reservoir_temp_obs.csv",
"out_data/reservoir_level_obs.csv")
03_config_sb_xml:
command: sb_render_post_xml(sbid_03_config,
xml_file = I('03_config.xml'),
"in_text/text_SHARED.yml",
"in_text/text_03_config.yml",
reservoir_metadata)
out_xml/03_config_fgdc_metadata.xml:
command: render(filename = target_name,
"in_text/text_SHARED.yml",
"in_text/text_03_config.yml",
reservoir_metadata)
03_config_sb_data:
command: sb_replace_files(sbid_03_config,
"out_data/reservoir_nml_values.json",
"out_data/reservoir_nml_files.zip")
04_inputs_sb_xml:
command: sb_render_post_xml(sbid_04_inputs,
xml_file = I('04_inputs.xml'),
"in_text/text_SHARED.yml",
"in_text/text_04_inputs.yml",
river_metadata2)
04_inputs_sb_data:
command: sb_replace_files(sbid_04_inputs,
"out_data/distance_matrix_drb.csv",
"out_data/distance_matrix_lordville.csv",
"out_data/reservoir_features_drb.csv",
"out_data/reservoir_features_lordville.csv",
"out_data/sntemp_inputs_outputs_drb.zip",
"out_data/sntemp_inputs_outputs_lordville.zip",
"out_data/reach_attributes_drb.csv",
"out_data/reach_attributes_lordville.csv",
"out_data/reservoir_interpolated_daily_water_budget_components.csv",
"out_data/noaagefs_meteo_files.zip")
out_xml/04_inputs_fgdc_metadata.xml:
command: render(filename = target_name,
"in_text/text_SHARED.yml",
"in_text/text_04_inputs.yml",
river_metadata2)
04_inputs_sb_meteo:
command: sb_replace_files(sbid_04_inputs,
"in_data/NLDAS_time[0.367700]_x[397]_y[136].csv",
"in_data/NLDAS_time[0.367700]_x[401]_y[136].csv",
file_hash = 'log/reservoir_meteo_files.yml')
05_predictions_sb_xml:
command: sb_render_post_xml(sbid_05_predictions,
xml_file = I('05_predictions.xml'),
"in_text/text_SHARED.yml",
"in_text/text_05_predictions.yml",
river_metadata2)
out_xml/05_predictions_fgdc_metadata.xml:
command: render(filename = target_name,
"in_text/text_SHARED.yml",
"in_text/text_05_predictions.yml",
river_metadata2)
05_predictions_sb_data:
command: sb_replace_files(sbid_05_predictions,
"out_data/reservoir_io_sntemp.csv",
"out_data/reservoir_downstream_preds.csv",
"out_data/reservoir_outlet_depth_preds.csv",
"out_data/dwallin_stream_preds.csv",
"out_data/forecast[2021-04-16_2021-07-16]_files.zip",
"in_data/dwallin_functions.R")
# ------ SB IDs --------
sbid_00_parent:
command: c(I('5f6a26af82ce38aaa2449100'))
sbid_01_spatial:
command: c(I('5f6a285d82ce38aaa244912e'))
sbid_02_observations:
command: c(I('5f6a287382ce38aaa2449131'))
sbid_03_config:
command: c(I('5f6a288982ce38aaa2449133'))
sbid_04_inputs:
command: c(I('5f6a289982ce38aaa2449135'))
sbid_05_predictions:
command: c(I('5f6a28a782ce38aaa2449137'))
sb_id_06_evaluation:
command: c(I('5f6a28ba82ce38aaa2449139'))