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Resources.html
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Resources.html
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---
layout: default
---
<head>
<title>Resources | USDRCG</title>
</head>
<section id="content-region-3" class="padding-40 page-tree-bg">
<div class="container">
<h3 class="page-tree-text">
Resources
</h3>
</div>
</section><!--page-tree end here-->
<div class="space-70"></div>
<div class="container">
<div class="row">
<div class="col-md-12">
<h4 class="heading-mini">
System Documentation
</h4>
<h5 class="page header"> <a href="https://usdrcg.gitbook.io/docs/">USDRCG Wiki Manuals</a>
<small>- Here you will find documentation written by us, specifically for our supercomputer. We cover a range of topics, from logging in and navigating to specific software how-to guides.
</small></h5>
</div>
</div>
</div>
<div class="space-20"></div>
<hr>
<div class="space-20"></div>
<div class="container">
<div class="row">
<div class="col-md-12">
<h4 class="heading-mini">
Software <small>(Note: many of these have USD HPC-specific documentation - check <a href="http://rcg.usd.edu/docs">here</a>) </small>
</h4>
<h5 class="page header"> <a href="https://www.vasp.at/">VASP</a>
<small>- Chemistry software used for ab initio simulations.
</small>
<h5 class="page header"> <a href="https://www.r-project.org/">R</a>
<small>- A high-level programming language used in stasticial analysis across disciplines.
</small>
<h5 class="page header"> <a href="http://geant4.cern.ch/">Geant4</a>
<small>- Physics toolkit used in particle research.
</small>
<h5 class="page header"> <a href="https://gcc.gnu.org/wiki/GFortranStandards">Fortran</a>
<small>- A widely used scientific programming language.
</small>
<h5 class="page header"> <a href="http://gaussian.com/">Gaussian</a>
<small>- Boasting a long list of methods, functionals, and basis sets, this quantum simulation package boasts a user interface.
</small>
<h5 class="page header"> <a href="https://www.python.org/">Python</a>
<small>- Python is a widely used and highly versatile high level programming language used in various disciplines.
</small>
<h5 class="page header"> <a href="https://bioconda.github.io/">Bioconda</a>
<small>- A channel for the conda package manager specializing in bioinformatics software.
</small>
<h5 class="page header"> <a href="https://root.cern.ch/">ROOT</a>
<small>- Developed by scientists at CERN, ROOT is a data analysis framework that can be integrated with R and Python.
</small>
</div>
</div>
</div>
<div class="space-20"></div>
<hr>
<div class="space-20"></div>
<div class="container">
<div class="row">
<div class="col-md-12">
<h4 class="heading-mini">
Online Portals
</h4>
<h5 class="page header"> <a href="https://sciencegateway.usd.edu/">Science Gateway</a>
<small> The Unviersity of South Dakota Science Gateway provides a graphical user interface portal for accessing and using HPC resources.
</small></h5>
</div>
</div>
</div>
<div class="space-20"></div>
<hr>
<div class="space-20"></div>
<div class="container">
<div class="row">
<div class="col-md-12">
<h4 class="heading-mini">
External Resources
</h4>
<h5 class="page header"> <a href="http://software-carpentry.org/">Software Carpentry</a>
<small>- This site has tutorials for beginners, from shell commands and scripting, to visualization techniques in Python and R.
</small></h5>
<h5 class="page header"> <a href="https://linuxjourney.com/">Linux Journey</a>
<small>- This site is in excercise/quiz format and has information in multiple languages on many linux distributions, basic shell usage, advanced shell usage, permissions, processes and more. The site categorizes its information into areas appropriate for users of every skill level.
</small></h5>
<h5 class="page header"> <a href="http://www.grymoire.com/Unix/">Unix Grymoire</a>
<small>- This site provides simple, yet in-depth, help to take your shell literacy to the next level.
</small></h5>
<h5 class="page header"> <a href="http://explainshell.com/">Explain Shell</a>
<small>- This site allows you to type (or paste) in shell commands to get an expanation of the components.
</small></h5>
<h5 class="page header"> <a href="https://www.codecademy.com/">Codecademy</a>
<small>- This site contains interactive tutorials for many programming languages.
</small></h5>
<h5 class="page header"> <a href="http://linuxcommand.org/learning_the_shell.php">Getting started with the Unix Shell</a>
<small>- This will help you understand what the Unix shell is and how it is used. Moving through folders on your computer, finding and editing files, plus basic structure of data manipulation will be covered. Finally, the structure of loops and scripts will be included.
</small></h5>
<h5 class="page header"> <a href="https://www.python.org/about/gettingstarted/">Programming with Python</a>
<small>- Python is known for its ability to handle data. This will help you understand how to manipulate data and visualize results.
</small></h5>
<h5 class="page header"> <a href="http://www.tutorialspoint.com/r/">Programming with R</a>
<small>- Statistical methods work great in R. This language can do much more, too. Here, you'll learn how to handle data and make great graphs.
</small></h5>
<h5 class="page header"> <a href="https://guides.github.com/activities/hello-world/">Version Control with Git/GitHub</a>
<small>- Keeping track of different versions of files can be a difficult task. Git does it for you. Learn how to set up an account and start using this powerful tool.
</small></h5>
</div>
</div>
</div>
<div class="space-70"></div>
<!-- jQuery plugins. -->
<script src="assets/js/plugins/plugins.js"></script>
<script src="assets/js/app.js"></script>