navigation.yml

# This is the configuration for the site navigation.

sidenav-breakpoint: 'desktop'

# This file defines the structure of various named navigational
# listings, any of which can be used (with some caveats) as the
# links in your header, footer, and per-page side navigation.
#
# For instance, if you have a "primary" navigation list here, you
# can use that as your header's primary navigation by setting
# `primary.links` to "primary":
#
# primary:
#   links: primary
#
primary:
  - text: About
    links:
      - text: Sign up for an account
        href: /about/signup
      - text: Computer Systems
        href: /about/compute
#     - text: Networking
#       href: /about/networking
      - text: Organization
        href: /about/organization
      - text: Policies
        href: /about/policies
      - text: Contact
        href: /about/contact
  - text: News
    links:
      - text: System Downtime
        href: /downtime/
      - text: Announcements
        href: /announcements/
      - text: User Stories
        href: /stories/
      - text: Newsletter
        href: /newsletter/
      - text: SCINet-X
        href: /scinet-x/
  - text: User Guides
    links:
      - text: Quick Start
        href: /guide/quickstart
      - text: Ceres HPC User manual
        href: /guide/ceres
      - text: Atlas HPC User Guide
        href: https://www.hpc.msstate.edu/computing/atlas
        external: true
      - text: Differences Between Ceres and Atlas
        href: /guide/CeresAtlasDifferences
      - text: Set up multifactor authentication
        href: /guide/multifactor
      - text: SCINet Storage Guide
        href: /guide/storage
      - text: Software Overview
        href: /guide/software
      - text: Installing R/Python/Perl Packages
        href: /guide/packageinstall
      - text: Installing Software with Conda
        href: /guide/conda
      - text: Transferring files
        href: /guide/file-transfer
      - text: Rclone
        href: /guide/rclone
      - text: CLC Workbench
        href: /guide/clc
      - text: Jupyter
        href: /guide/jupyter
      - text: Rstudio
        href: /guide/rstudio
      - text: Geneious
        href: /guide/geneious
      - text: Galaxy on SCINet
        href: /guide/galaxy
      - text: Containers
        href: /guide/singularity
      - text: SMRTLink using Command Line
        href: /guide/smrtlink
      - text: AWS Resources
        href: /guide/AWS/documentation
#      - text: Introduction to Linux
#        href: /guide/linuxintroduction
      - text: SCINet VPN
        href: /guide/vpn
      - text: Ceres Open OnDemand
        href: /guide/ceres_ood
  - text: Working Groups
    links:
      - text: Overview
        href: /working-groups
      - text: Ag100Pest
        href: /working-groups/ag100pest
      - text: Arthropod Genomics
        href: /working-groups/arthropods
      - text: Geospatial Research
        href: /working-groups/geospatial
      - text: Microbiome
        href: /working-groups/microbiome
      - text: LTAR Phenology
        href: /working-groups/LTARphenology
      - text: SCINet Policy Committee
        href: /working-groups/policy
      - text: SCINet Website Developers
        href: /working-groups/webdev
      - text: Workbook Developers
        href: /working-groups/workbooks
      - text: Pollinator
        href: /working-groups/pollinator
  - text: Training
    links:
#     - text: Overview
#       href: /training/overview
#     - text: ARS Science Tutorials
#       href: /training/tutorials/
      - text: Learning Pathway
        href: /training/learningpath
      - text: Free Online Training
        href: /training/free-online-training
#     - text: Videos
#       href: /training/video/
      - text: Upcoming Training Events
        href: /training/training_event
      - text: Training Event Archive
        href: /training-archive/
      - text: Bioinformatics Workbook
        href: /training/bioinformatics-workbook
#     - text: Useful Links
#       href: /training/useful-links
      - text: Coursera
        href: /training/coursera
  - text: Events
    links:
      - text: Upcoming Training Events
        href: /training/training_event
      - text: Training Events Archive
        href: /training-archive
      - text: Upcoming events (besides trainings)
        href: /events/upcoming_events
      - text: Events Archive
        href: /events-archive
  - text: Use Cases
    links:
#      - text: Research Leader
#        href: /user/rl/
#      - text: National Program Leader
#        href: /user/npl
      - text: Genomics
        href: /user/genomics/
      - text: Plant breeding
        href: /user/plant-breeding/
#      - text: Animal breeding
#        href: /user/animal-breeding/
      - text: Geospatial
        href: /user/geospatial/
      - text: Hydrology
        href: /user/hydrology/
  - text: Support
    links:
      - text: Virtual Research Support Core (VSRC)
        href: /support/vrsc/
      - text: FAQ's
        href: /support/faq/
      - text: USDA-ARS SCINet Forum
        href: https://forum.scinet.usda.gov
      - text: Request Project Storage
        href: /support/request-storage
      - text: Request Software
        href: /support/request-software
      - text: Request AWS
        href: /support/request-AWS
      - text: Ceres Job Script Generator
        href: /support/ceres-job-script
  - text: Opportunities
    links:
      - text: SAC Membership
        href: /opportunities/SAC
      - text: Request a Workshop
        href: /opportunities/request-workshop
      - text: Fellowships (PhD & MS)
        href: /opportunities/postdocs
      - text: AI Innovation Fund
        href: /opportunities/ai-innovation
      - text: SCINet and AI-COE fellowship proposals
        href: /opportunities/scinet-aicoe-fellowships
#      - text: Open Positions
#        href: /opportunities/open_positions

# secondary:
#   - text: Documentation
#     href: /docs/
#   - text: Theme
#     href: /theme/

#secondary:
#  - text: Contents
#    href: /guide/


# Uncomment the items below and comment the items above in the `footer` list
# to use footer link columns in the 'big' footer style.
footer:
  - text:
    links:
      - text: Policies and Links
        href: https://usda.gov/policies-and-links
        external: true
      - text: Our Performance
        href: https://usda.gov/our-agency/about-usda/performance
        external: true
      - text: Careers
        href: https://www.usda.gov/our-agency/careers
        external: true
      - text: Report Fraud on USDA
        href: https://www.usda.gov/oig/forms/contractor-fraud
        external: true
      - text: Visit OIG
        href: https://www.usda.gov/oig/
        external: true
  - text:
    links:
      - text: Plain Writing
        href: https://usda.gov/plain-writing
        external: true
      - text: Open
        href: https://usda.gov/open
        external: true
      - text: FOIA
        href: https://www.dm.usda.gov/foia/
        external: true
      - text: Accessibility Statement
        href: https://usda.gov/accessibility-statement
        external: true
      - text: Privacy Policy
        href: https://usda.gov/privacy-policy
        external: true
  - text:
    links:
      - text: Non-Discrimination Statement
        href: https://usda.gov/non-discrimination-statement
        external: true
      - text: Anti-Harassment Policy
        href: https://www.ascr.usda.gov/civil-rights-statements
        external: true
      - text: Information Quality
        href: https://www.ocio.usda.gov/policy-directives-records-forms/information-quality-activities
        external: true
      - text: USA.gov
        href: https://www.usa.gov
        external: true
      - text: WhiteHouse.gov
        href: https://www.whitehouse.gov
        external: true
  - text:
    links:
      - text: eGov
        href: https://usda.gov/federal-web-site-inventory
        external: true
      - text: Feedback
        href: mailto:scinet_vrsc@usda.gov
        external: true
      - text: No FEAR Act Data
        href: https://usda.gov/nofear
        external: true