diff --git a/README.rst b/README.rst index 40545c6..e4f5b4a 100644 --- a/README.rst +++ b/README.rst @@ -99,6 +99,9 @@ Usage Oomycota, Haptophyceae, Raphidophyceae, Rhizaria, Synurophyceae, Tracheophyta, Eustigmatophyceae, All}. Default Fungi. +--cluster_id The percent identity for clustering reads, set to 1 + for exact dereplication. Default 0.987. + --log Log file. Default is ITSxpress.log. --threads Number of processor threads to use. Default is 1.