diff --git a/Platypus/Running Platypus Docker b/Platypus/Running Platypus Docker index 6cee40e..fdad472 100644 --- a/Platypus/Running Platypus Docker +++ b/Platypus/Running Platypus Docker @@ -19,7 +19,7 @@ to build the docker image (make sure to include the period). 4. Once the image is built, in any directory, you can use: -sudo docker run -it -v /data/ref/:/data/ref \ +sudo docker run --rm -it -v /data/ref/:/data/ref \ -v /data/rnaseqVarCall/rawGATK_PipelineOutput/SAMPLE_DIRECTORY/:/data/work \ -e refgenome=GCA_000001405.15_GRCh38_no_alt_analysis_set.fa \ -e input=SAMPLE.sortedByCoord.md.split.realigned.bam \