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Pipeline does not support single end #36

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e-t-k opened this issue Oct 21, 2022 · 0 comments

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e-t-k commented Oct 21, 2022

either support it or make it clear in the docs that it assumes paired end

would need to go through and add a toggle to the fabfile -- looks like toil does have a single end option here https://github.com/BD2KGenomics/toil-rnaseq/blob/master/docker/wrapper.py not sure how the other steps are affected.

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