Update RMarkdown episode to use Quarto and add section on parametrised reports

[milanmlft]

Parametrised reports

Warning

There seems be an issue with quarto::quarto_render() when generating parameterised reports in that it will overwrite the output figures, so the rendered reports will all show the exact same plot...

See quarto-dev/quarto-r#205 for more info

This kind of renders the whole gapminder example useless, but I left it in with a callout and some notes about how to get the same with R Markdown. With a bit of luck, the issue gets fixes soonish 🤞

Fixes #5

[github-actions]

Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

• 🎯 correct output
• 🖼️ correct figures
• ❓ new warnings
• ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/UCL-ARC/r-amr-epidemiology/compare/md-outputs..md-outputs-PR-19

The following changes were observed in the rendered markdown documents:

 22-knitr-markdown.md => 22-quarto.md               | 370 +++++++++++++++------
 config.yaml                                        |  94 +++---
 ...-markdown-rendered-rmd_to_html_fig-1.png (gone) | Bin 7382 -> 0 bytes
 fig/New_Quarto_Document.png (new)                  | Bin 0 -> 55936 bytes
 md5sum.txt                                         |   4 +-
 5 files changed, 326 insertions(+), 142 deletions(-)

What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2024-08-20 17:22:13 +0000