submit.yml.erb

# Job submission configuration file
#
---

#
# Configure the content of the job script for the batch job here
# @see http://www.rubydoc.info/gems/ood_core/OodCore/BatchConnect/Template
#
batch_connect:
  # We use the basic web server template for generating the job script
  #
  # @note Do not change this unless you know what you are doing!
  template: "basic"

  # You can override the command used to query the hostname of the compute node
  # here
  #
  # @note It is **highly** recommended this be set in the global cluster
  #   configuration file so that all apps can take advantage of it by default
  #
  #set_host: "host=$(hostname -A | awk '{print $2}')"

#
# Configure the job script submission parameters for the batch job here
# @see http://www.rubydoc.info/gems/ood_core/OodCore/Job/Script
#
#script:
#  queue_name: "queue1"
#  accounting_id: "account1"
#  email_on_started: true
#  native: # ... array of command line arguments ...
script:
    native:
        - -pe
        - smp
        - <%= num_cores.blank? ? 1 : num_cores.to_i %>
        - -l
        - mem=<%= memory_gigs %>G
        - -l
        - tmpfs=<%= tmpfs_gigs %>G
        - -M
        - <%= ENV['USER'] %>@ucl.ac.uk
        - -m
        - <%= (bc_email_on_started == "1") ? "b" : "n" %>
        - <% if num_gpus != 0 %>-l<% end %>
        - <% if num_gpus != 0 %>gpu=<%= num_gpus %><% end %>