From 7e1f63d098dbcc171173d02aec0016029355999d Mon Sep 17 00:00:00 2001 From: Penelope Yong Date: Fri, 3 Jan 2025 19:41:46 +0000 Subject: [PATCH] Update Manifest (#571) --- Manifest.toml | 344 ++++++++++++++++++++++++++------------------------ 1 file changed, 178 insertions(+), 166 deletions(-) diff --git a/Manifest.toml b/Manifest.toml index 980a27805..a42a0aae7 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -244,9 +244,9 @@ version = "0.4.7" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "2a81cc8adf470ac6bd87eef3ca3d194d08a8754c" +git-tree-sha1 = "fc8d8197de6c69ad6fd01c255b6b386ca8199331" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.8.0" +version = "1.9.0" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -357,7 +357,7 @@ version = "1.2.0" deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+2" +version = "1.0.8+4" [[deps.CEnum]] git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" @@ -407,15 +407,15 @@ version = "0.10.8" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "bcffdcaed50d3453673b852f3522404a94b50fad" +git-tree-sha1 = "4312d7869590fab4a4f789e97bd82f0a04eaaa05" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.72.1" +version = "1.72.2" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "3e4b134270b372f2ed4d4d0e936aabaefc1802bc" +git-tree-sha1 = "1713c74e00545bfe14605d2a2be1712de8fbcb58" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.25.0" +version = "1.25.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -458,15 +458,19 @@ version = "3.27.1" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +git-tree-sha1 = "c7acce7a7e1078a20a285211dd73cd3941a871d6" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.5" +version = "0.12.0" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -474,9 +478,9 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +git-tree-sha1 = "64e15186f0aa277e174aa81798f7eb8598e0157e" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.11" +version = "0.13.0" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" @@ -516,9 +520,9 @@ version = "1.1.1+0" [[deps.ComponentArrays]] deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "ConstructionBase", "ForwardDiff", "Functors", "LinearAlgebra", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "e9b355215c05eeaaa7bf7d2ae0d329074e3cb045" +git-tree-sha1 = "9921db9efec9f395210f02b56b87b93dbb6cfd2b" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.19" +version = "0.15.20" weakdeps = ["GPUArrays", "KernelAbstractions", "Optimisers", "RecursiveArrayTools", "ReverseDiff", "SciMLBase", "Tracker", "Zygote"] [deps.ComponentArrays.extensions] @@ -635,10 +639,10 @@ uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" version = "0.1.2" [[deps.DelayDiffEq]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqRosenbrock", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"] -git-tree-sha1 = "cfcd0d368d6950473eab154560b22ae7a99b63be" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqRosenbrock", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack", "SymbolicIndexingInterface"] +git-tree-sha1 = "7123a01ba4ec2d4058bd14478afd5318c49ea6c1" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.49.0" +version = "5.52.0" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -728,9 +732,9 @@ version = "7.15.0" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ffe68edc2a4ad0ff2eeb5a32cc99ab45746fe3d" +git-tree-sha1 = "5df172ce4e9da710603591f48c7af74eef288892" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.27" +version = "0.6.28" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -772,9 +776,9 @@ version = "0.6.27" [[deps.DispatchDoctor]] deps = ["MacroTools", "Preferences"] -git-tree-sha1 = "453df2ce2aef7de59c69a56d31dcd2ec3384dd77" +git-tree-sha1 = "f311fe66bfe4e38b2f1c8d1081f06920092b57aa" uuid = "8d63f2c5-f18a-4cf2-ba9d-b3f60fc568c8" -version = "0.4.17" +version = "0.4.19" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.DispatchDoctor.extensions] @@ -799,9 +803,9 @@ version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "9d9e93d19c912ee6f0f3543af0d8839079dbd0d7" +git-tree-sha1 = "4b138e4643b577ccf355377c2bc70fa975af25de" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.114" +version = "0.25.115" weakdeps = ["ChainRulesCore", "DensityInterface", "Test"] [deps.Distributions.extensions] @@ -841,9 +845,9 @@ version = "3.4.7" [[deps.DynamicPPL]] deps = ["ADTypes", "AbstractMCMC", "AbstractPPL", "Accessors", "BangBang", "Bijectors", "Compat", "ConstructionBase", "Distributions", "DocStringExtensions", "InteractiveUtils", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MacroTools", "OrderedCollections", "Random", "Requires", "Test"] -git-tree-sha1 = "6ca044778593afd41390c36ca7b3617abdd8fb80" +git-tree-sha1 = "5c2bc37cbc946902e1af5ae8486f24bb585d20cb" uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" -version = "0.31.5" +version = "0.32.2" [deps.DynamicPPL.extensions] DynamicPPLChainRulesCoreExt = ["ChainRulesCore"] @@ -876,13 +880,14 @@ version = "1.0.4" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "b4694d729af37db8111692b2b7f04da131a38f32" +git-tree-sha1 = "529a01a0ffdb0f490c24cc5308f0f9b6074a1339" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.22" +version = "0.13.27" [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" EnzymeChainRulesCoreExt = "ChainRulesCore" + EnzymeGPUArraysCoreExt = "GPUArraysCore" EnzymeLogExpFunctionsExt = "LogExpFunctions" EnzymeSpecialFunctionsExt = "SpecialFunctions" EnzymeStaticArraysExt = "StaticArrays" @@ -890,6 +895,7 @@ version = "0.13.22" [deps.Enzyme.weakdeps] BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" @@ -905,9 +911,9 @@ weakdeps = ["Adapt"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "e27c2863bf92622bcf89465c078379b8c2c61d2d" +git-tree-sha1 = "b81b0143399acd84a2ed2a1fa0b4ab55e25ee625" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.168+0" +version = "0.0.172+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -925,7 +931,7 @@ version = "0.1.11" deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "e51db81749b0777b2147fbe7b783ee79045b8e99" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.6.4+1" +version = "2.6.4+3" [[deps.ExponentialUtilities]] deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] @@ -975,7 +981,7 @@ version = "1.8.0" deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "4d81ed14783ec49ce9f2e168208a12ce1815aa25" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+1" +version = "3.3.10+3" [[deps.FLoops]] deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] @@ -1006,6 +1012,12 @@ git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" +[[deps.FastGaussQuadrature]] +deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] +git-tree-sha1 = "fd923962364b645f3719855c88f7074413a6ad92" +uuid = "442a2c76-b920-505d-bb47-c5924d526838" +version = "1.0.2" + [[deps.FastLapackInterface]] deps = ["LinearAlgebra"] git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" @@ -1157,9 +1169,9 @@ version = "2.13.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +git-tree-sha1 = "846f7026a9decf3679419122b49f8a1fdb48d2d5" uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.14+0" +version = "1.0.16+0" [[deps.FunctionProperties]] deps = ["Cassette", "DiffRules"] @@ -1191,9 +1203,9 @@ version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "532f9126ad901533af1d4f5c198867227a7bb077" +git-tree-sha1 = "fcb0584ff34e25155876418979d4c8971243bb89" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.0+1" +version = "3.4.0+2" [[deps.GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] @@ -1221,15 +1233,15 @@ version = "1.0.1" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "52adc6828958ea8a0cf923d53aa10773dbca7d5f" +git-tree-sha1 = "424c8f76017e39fdfcdbb5935a8e6742244959e8" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.9" +version = "0.73.10" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4e9e2966af45b06f24fd952285841428f1d6e858" +git-tree-sha1 = "b90934c8cb33920a8dc66736471dc3961b42ec9f" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.9+0" +version = "0.73.10+0" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] @@ -1245,9 +1257,9 @@ version = "0.21.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "48b5d4c75b2c9078ead62e345966fa51a25c05ad" +git-tree-sha1 = "b0036b392358c80d2d2124746c2bf3d48d457938" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.82.2+1" +version = "2.82.4+0" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1286,9 +1298,9 @@ version = "1.14.2+1" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "627fcacdb7cb51dc67f557e1598cdffe4dda386d" +git-tree-sha1 = "c67b33b085f6e2faf8bf79a61962e7339a81129c" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.14" +version = "1.10.15" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -1316,7 +1328,7 @@ weakdeps = ["AbstractTrees"] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "50aedf345a709ab75872f80a2779568dc0bb461b" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.11.2+1" +version = "2.11.2+3" [[deps.HypergeometricFunctions]] deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] @@ -1434,9 +1446,9 @@ version = "0.1.9" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "be3dc50a92e5a386872a493a10050136d4703f9b" +git-tree-sha1 = "a007feb38b422fbdab534406aeca1b86823cb4d6" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.6.1" +version = "1.7.0" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -1446,9 +1458,9 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "25ee0be4d43d0269027024d75a24c24d6c6e590c" +git-tree-sha1 = "eac1206917768cb54957c65a615460d87b455fc1" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.0.4+0" +version = "3.1.1+0" [[deps.JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -1513,9 +1525,9 @@ version = "0.4.1" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "36bdbc52f13a7d1dcb0f3cd694e01677a515655b" +git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.0+0" +version = "4.0.1+0" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] @@ -1554,7 +1566,7 @@ weakdeps = ["Serialization"] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "854a9c268c43b77b0a27f22d7fab8d33cdb3a731" uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.2+1" +version = "2.10.2+3" [[deps.L_BFGS_B_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1667,9 +1679,9 @@ version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +git-tree-sha1 = "27ecae93dd25ee0909666e6835051dd684cc035e" uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" +version = "3.2.2+2" [[deps.Libgcrypt_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] @@ -1685,9 +1697,9 @@ version = "1.7.0+0" [[deps.Libgpg_error_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c6ce1e19f3aec9b59186bdf06cdf3c4fc5f5f3e6" +git-tree-sha1 = "df37206100d39f79b3376afb6b9cee4970041c61" uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.50.0+0" +version = "1.51.1+0" [[deps.Libiconv_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1699,7 +1711,7 @@ version = "1.17.0+1" deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "84eef7acd508ee5b3e956a2ae51b05024181dee0" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.40.2+0" +version = "2.40.2+2" [[deps.Libtask]] deps = ["FunctionWrappers", "LRUCache", "LinearAlgebra", "Statistics"] @@ -1709,15 +1721,15 @@ version = "0.8.8" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "b404131d06f7886402758c9ce2214b636eb4d54a" +git-tree-sha1 = "4ab7581296671007fc33f07a721631b8855f4b1d" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.7.0+0" +version = "4.7.1+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "edbf5309f9ddf1cab25afc344b1e8150b7c832f9" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.40.2+0" +version = "2.40.2+2" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] @@ -2053,7 +2065,7 @@ version = "0.1.11" deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] git-tree-sha1 = "70e830dab5d0775183c99fc75e4c24c614ed7142" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" -version = "5.5.1+0" +version = "5.5.1+2" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -2159,9 +2171,9 @@ version = "0.8.1" [[deps.Mooncake]] deps = ["ADTypes", "ChainRules", "ChainRulesCore", "DiffRules", "DiffTests", "ExprTools", "FunctionWrappers", "Graphs", "InteractiveUtils", "LinearAlgebra", "MistyClosures", "Random", "Setfield", "Test"] -git-tree-sha1 = "86238d75d47d0cae923504e201c8fc00b797705f" +git-tree-sha1 = "bf9634a9db60ff8f40c9fc55f8e899c9858a69a2" uuid = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" -version = "0.4.63" +version = "0.4.70" [deps.Mooncake.extensions] MooncakeAllocCheckExt = "AllocCheck" @@ -2310,10 +2322,10 @@ version = "3.15.1" SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionProperties", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "46772fc296d9f16c3ab78a8ef00008ab075de677" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "5bca24ce7b0c034dcbdc6ad6d658b02e0eed566e" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "1.3.3" +version = "1.4.0" weakdeps = ["BandedMatrices", "DiffEqBase", "ForwardDiff", "LineSearch", "LinearSolve", "SparseArrays", "SparseMatrixColorings"] [deps.NonlinearSolveBase.extensions] @@ -2327,15 +2339,15 @@ weakdeps = ["BandedMatrices", "DiffEqBase", "ForwardDiff", "LineSearch", "Linear [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "05a42691900f8f14e930478d5638a5f0fc973601" +git-tree-sha1 = "a1ea35ab0bcc99753e26d574ba1e339f19d100fa" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "1.1.0" +version = "1.2.0" [[deps.ObjectFile]] deps = ["Reexport", "StructIO"] -git-tree-sha1 = "7249afa1c4dfd86bfbcc9b28939ab6ef844f4e11" +git-tree-sha1 = "dfcc26739b1ffa3ab51fb16f01ba7eb144f7bc50" uuid = "d8793406-e978-5875-9003-1fc021f44a92" -version = "0.4.2" +version = "0.4.3" [[deps.Observables]] git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" @@ -2343,9 +2355,9 @@ uuid = "510215fc-4207-5dde-b226-833fc4488ee2" version = "0.5.5" [[deps.OffsetArrays]] -git-tree-sha1 = "39d000d9c33706b8364817d8894fae1548f40295" +git-tree-sha1 = "5e1897147d1ff8d98883cda2be2187dcf57d8f0c" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.14.2" +version = "1.15.0" weakdeps = ["Adapt"] [deps.OffsetArrays.extensions] @@ -2389,13 +2401,13 @@ version = "1.4.3" deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.15+1" +version = "3.0.15+3" [[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" +version = "0.5.6+0" [[deps.Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] @@ -2485,32 +2497,32 @@ uuid = "89bda076-bce5-4f1c-845f-551c83cdda9a" version = "1.1.0" [[deps.OrdinaryDiffEqBDF]] -deps = ["ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "b4498d40bf35da0b6d22652ff2e9d8820590b3c6" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "StaticArrays", "TruncatedStacktraces"] +git-tree-sha1 = "86ccea2bd0fdfa5570172a9717061f6417e21dea" uuid = "6ad6398a-0878-4a85-9266-38940aa047c8" -version = "1.1.2" +version = "1.2.0" [[deps.OrdinaryDiffEqCore]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleUnPack", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "c7f395034602c3e4d40ece93dc2c9f066f0ce61f" +git-tree-sha1 = "72c77ae685fddb6291fff22dba13f4f32602475c" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "1.13.0" +version = "1.14.1" weakdeps = ["EnzymeCore"] [deps.OrdinaryDiffEqCore.extensions] OrdinaryDiffEqCoreEnzymeCoreExt = "EnzymeCore" [[deps.OrdinaryDiffEqDefault]] -deps = ["DiffEqBase", "EnumX", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "PrecompileTools", "Preferences", "Reexport"] -git-tree-sha1 = "c8223e487d58bef28a3535b33ddf8ffdb44f46fb" +deps = ["ADTypes", "DiffEqBase", "EnumX", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "PrecompileTools", "Preferences", "Reexport"] +git-tree-sha1 = "2ee6ef0bbed24976e4acfccf609801f8a5bf8223" uuid = "50262376-6c5a-4cf5-baba-aaf4f84d72d7" -version = "1.1.0" +version = "1.2.0" [[deps.OrdinaryDiffEqDifferentiation]] deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays"] -git-tree-sha1 = "8977f283a7d89c5d5c06c933467ed4af0a99f2f7" +git-tree-sha1 = "e4adff09a6d47b74c16e7e08f10fa32000e2e5ed" uuid = "4302a76b-040a-498a-8c04-15b101fed76b" -version = "1.2.0" +version = "1.3.0" [[deps.OrdinaryDiffEqExplicitRK]] deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "TruncatedStacktraces"] @@ -2519,22 +2531,22 @@ uuid = "9286f039-9fbf-40e8-bf65-aa933bdc4db0" version = "1.1.0" [[deps.OrdinaryDiffEqExponentialRK]] -deps = ["DiffEqBase", "ExponentialUtilities", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqVerner", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "f63938b8e9e5d3a05815defb3ebdbdcf61ec0a74" +deps = ["ADTypes", "DiffEqBase", "ExponentialUtilities", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqVerner", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "8659d5fdfe0798bbb5bcd8dc8d08092744b6dfa4" uuid = "e0540318-69ee-4070-8777-9e2de6de23de" -version = "1.1.0" +version = "1.2.0" [[deps.OrdinaryDiffEqExtrapolation]] -deps = ["DiffEqBase", "FastBroadcast", "FastPower", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "RecursiveArrayTools", "Reexport"] -git-tree-sha1 = "048bcccc8f59c20d5b4ad268eef4d7d21c005a94" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastPower", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "RecursiveArrayTools", "Reexport"] +git-tree-sha1 = "b8d852b23246b1427178520442e8e7d89aa1c64c" uuid = "becaefa8-8ca2-5cf9-886d-c06f3d2bd2c4" -version = "1.2.1" +version = "1.3.0" [[deps.OrdinaryDiffEqFIRK]] -deps = ["DiffEqBase", "FastBroadcast", "FastPower", "LinearAlgebra", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLOperators"] -git-tree-sha1 = "7a6e3996dc0850aee6cdc10c8afa377242fce702" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastGaussQuadrature", "FastPower", "LinearAlgebra", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators"] +git-tree-sha1 = "39a52e278e21018585fc02c04a54f0ab98d03369" uuid = "5960d6e9-dd7a-4743-88e7-cf307b64f125" -version = "1.5.0" +version = "1.6.0" [[deps.OrdinaryDiffEqFeagin]] deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "RecursiveArrayTools", "Reexport", "Static"] @@ -2555,10 +2567,10 @@ uuid = "d28bc4f8-55e1-4f49-af69-84c1a99f0f58" version = "1.1.0" [[deps.OrdinaryDiffEqIMEXMultistep]] -deps = ["DiffEqBase", "FastBroadcast", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Reexport"] -git-tree-sha1 = "9f8f52aad2399d7714b400ff9d203254b0a89c4a" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Reexport"] +git-tree-sha1 = "b35b6db127ad50bc502f72dbd5a84a1e1d1bbf01" uuid = "9f002381-b378-40b7-97a6-27a27c83f129" -version = "1.1.0" +version = "1.2.0" [[deps.OrdinaryDiffEqLinear]] deps = ["DiffEqBase", "ExponentialUtilities", "LinearAlgebra", "OrdinaryDiffEqCore", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators"] @@ -2591,10 +2603,10 @@ uuid = "c9986a66-5c92-4813-8696-a7ec84c806c8" version = "1.1.0" [[deps.OrdinaryDiffEqPDIRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Polyester", "Reexport", "StaticArrays"] -git-tree-sha1 = "a8b7f8107c477e07c6a6c00d1d66cac68b801bbc" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Polyester", "Reexport", "StaticArrays"] +git-tree-sha1 = "70e348c116ce62df4e4b4f90f3c8bb4a8164df31" uuid = "5dd0a6cf-3d4b-4314-aa06-06d4e299bc89" -version = "1.1.0" +version = "1.2.0" [[deps.OrdinaryDiffEqPRK]] deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "Reexport"] @@ -2616,15 +2628,15 @@ version = "1.1.0" [[deps.OrdinaryDiffEqRosenbrock]] deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "Static"] -git-tree-sha1 = "760a51a626d0065455847e4a3f788b07e86e5090" +git-tree-sha1 = "749518f27e886164ee07e6df49b631beaca8c9ac" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.3.1" +version = "1.4.0" [[deps.OrdinaryDiffEqSDIRK]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "f6683803a58de600ab7a26d2f49411c9923e9721" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "45eed1444fbfa510e1806d4153f83bd862d2d035" uuid = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" -version = "1.1.0" +version = "1.2.0" [[deps.OrdinaryDiffEqSSPRK]] deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "Static", "StaticArrays"] @@ -2633,10 +2645,10 @@ uuid = "669c94d9-1f4b-4b64-b377-1aa079aa2388" version = "1.2.0" [[deps.OrdinaryDiffEqStabilizedIRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "StaticArrays"] -git-tree-sha1 = "348fd6def9a88518715425025eadd58517017325" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "StaticArrays"] +git-tree-sha1 = "f2533f086540db6eb3a5eddbecf963cbc4ab6015" uuid = "e3e12d00-db14-5390-b879-ac3dd2ef6296" -version = "1.1.0" +version = "1.2.0" [[deps.OrdinaryDiffEqStabilizedRK]] deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "StaticArrays"] @@ -2687,9 +2699,9 @@ weakdeps = ["Requires", "TOML"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e127b609fb9ecba6f201ba7ab753d5a605d53801" +git-tree-sha1 = "ed6834e95bd326c52d5675b4181386dfbe885afb" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.54.1+0" +version = "1.55.5+0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -2704,10 +2716,10 @@ uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" version = "2.8.1" [[deps.Pathfinder]] -deps = ["ADTypes", "Distributions", "Folds", "IrrationalConstants", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "Optim", "Optimization", "OptimizationOptimJL", "PDMats", "PSIS", "ProgressLogging", "Random", "Requires", "SciMLBase", "Statistics", "StatsBase", "Transducers", "UnPack"] -git-tree-sha1 = "f9d783f5d5524321d77610baf024eb986aa21810" +deps = ["ADTypes", "Distributions", "Folds", "IrrationalConstants", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "Optim", "Optimization", "OptimizationOptimJL", "PDMats", "PSIS", "ProgressLogging", "Random", "Requires", "SciMLBase", "Statistics", "StatsBase", "Transducers"] +git-tree-sha1 = "3a28e8450b63d3657adf804984ed0dd081a74447" uuid = "b1d3bc72-d0e7-4279-b92f-7fa5d6d2d454" -version = "0.9.7" +version = "0.9.9" weakdeps = ["Accessors", "DynamicHMC", "DynamicPPL", "MCMCChains", "Turing"] [deps.Pathfinder.extensions] @@ -3039,9 +3051,9 @@ version = "0.5.1+0" [[deps.Roots]] deps = ["Accessors", "CommonSolve", "Printf"] -git-tree-sha1 = "8e3694d669323cdfb560e344dc872b984de23b71" +git-tree-sha1 = "7e765d947455fbed09e230ee8b63c8904cbf1df9" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.2.2" +version = "2.2.3" [deps.Roots.extensions] RootsChainRulesCoreExt = "ChainRulesCore" @@ -3086,9 +3098,9 @@ version = "0.1.1" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "213408a448e27170e4fca428838b8d11c5bbf1ab" +git-tree-sha1 = "3e5a9c5d6432b77a271646b4ada2573f239ac5c4" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.68.1" +version = "2.70.0" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -3256,9 +3268,9 @@ version = "0.6.9" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "b906758c107b049b6b71599b9f928d9b14e5554a" +git-tree-sha1 = "d79802152d958607f414f5447cb25e314db979c0" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.23.0" +version = "2.23.1" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -3337,9 +3349,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "777657803913ffc7e8cc20f0fd04b634f871af8f" +git-tree-sha1 = "47091a0340a675c738b1304b58161f3b0839d454" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.8" +version = "1.9.10" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -3500,9 +3512,9 @@ version = "1.0.3" [[deps.TZJData]] deps = ["Artifacts"] -git-tree-sha1 = "36b40607bf2bf856828690e097e1c799623b0602" +git-tree-sha1 = "006a327222dda856e2304959e566ff0104ac8594" uuid = "dc5dba14-91b3-4cab-a142-028a31da12f7" -version = "1.3.0+2024b" +version = "1.3.1+2024b" [[deps.TableOperations]] deps = ["SentinelArrays", "Tables", "Test"] @@ -3563,10 +3575,10 @@ uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" version = "0.5.2" [[deps.TimeZones]] -deps = ["Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] -git-tree-sha1 = "33c771f2157712ff4c85931186a4984efbe58934" +deps = ["Artifacts", "Dates", "Downloads", "InlineStrings", "Mocking", "Printf", "Scratch", "TZJData", "Unicode", "p7zip_jll"] +git-tree-sha1 = "fcbcffdc11524d08523e92ae52214b29d90b50bb" uuid = "f269a46b-ccf7-5d73-abea-4c690281aa53" -version = "1.19.0" +version = "1.20.0" weakdeps = ["RecipesBase"] [deps.TimeZones.extensions] @@ -3640,9 +3652,9 @@ version = "1.6.0" [[deps.Turing]] deps = ["ADTypes", "AbstractMCMC", "Accessors", "AdvancedHMC", "AdvancedMH", "AdvancedPS", "AdvancedVI", "BangBang", "Bijectors", "Compat", "DataStructures", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "MCMCChains", "NamedArrays", "Optimization", "OptimizationOptimJL", "OrderedCollections", "Printf", "Random", "Reexport", "SciMLBase", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "d07121bfa230d617551c5c77c334874cfbb7fc79" +git-tree-sha1 = "d1b261f1a37d5daed651ef6f332d09b9cf22823d" uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" -version = "0.35.3" +version = "0.35.5" weakdeps = ["DynamicHMC", "Optim"] [deps.Turing.extensions] @@ -3651,9 +3663,9 @@ weakdeps = ["DynamicHMC", "Optim"] [[deps.TuringBenchmarking]] deps = ["ADTypes", "AbstractMCMC", "BenchmarkTools", "DynamicPPL", "ForwardDiff", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "PrettyTables", "Requires", "ReverseDiff", "Zygote"] -git-tree-sha1 = "2421fcac17d8f62c02e9c95c60968faa72ef95d8" +git-tree-sha1 = "1489ccf0fff5b2b1d612003a95772c1fda6f0e62" uuid = "0db1332d-5c25-4deb-809f-459bc696f94f" -version = "0.5.6" +version = "0.5.7" [deps.TuringBenchmarking.extensions] TuringBenchmarkingBridgeStanExt = "BridgeStan" @@ -3688,9 +3700,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "01915bfcd62be15329c9a07235447a89d588327c" +git-tree-sha1 = "c0667a8e676c53d390a09dc6870b3d8d6650e2bf" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.21.1" +version = "1.22.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -3737,15 +3749,15 @@ version = "1.3.243+0" [[deps.Wayland_jll]] deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" +git-tree-sha1 = "85c7811eddec9e7f22615371c3cc81a504c508ee" uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" +version = "1.21.0+2" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" +git-tree-sha1 = "5db3e9d307d32baba7067b13fc7b5aa6edd4a19a" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.31.0+0" +version = "1.36.0+0" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] @@ -3806,9 +3818,9 @@ version = "1.1.42+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "15e637a697345f6743674f1322beefbc5dcd5cfc" +git-tree-sha1 = "beef98d5aad604d9e7d60b2ece5181f7888e2fd6" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.6.3+0" +version = "5.6.4+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3826,43 +3838,43 @@ version = "1.2.4+0" deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] git-tree-sha1 = "9dafcee1d24c4f024e7edc92603cedba72118283" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+1" +version = "1.8.6+3" [[deps.Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "2b0e27d52ec9d8d483e2ca0b72b3cb1a8df5c27a" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+1" +version = "1.0.11+3" [[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "807c226eaf3651e7b2c468f687ac788291f9a89b" uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" +version = "1.2.3+0" [[deps.Xorg_libXdmcp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "02054ee01980c90297412e4c809c8694d7323af3" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+1" +version = "1.1.4+3" [[deps.Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] git-tree-sha1 = "d7155fea91a4123ef59f42c4afb5ab3b4ca95058" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.6+1" +version = "1.3.6+3" [[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "6fcc21d5aea1a0b7cce6cab3e62246abd1949b86" uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" +version = "6.0.0+0" [[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "984b313b049c89739075b8e2a94407076de17449" uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" +version = "1.8.2+0" [[deps.Xorg_libXinerama_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll"] @@ -3886,13 +3898,13 @@ version = "0.9.11+1" deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "fee57a273563e273f0f53275101cd41a8153517a" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+1" +version = "0.1.1+3" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] git-tree-sha1 = "1a74296303b6524a0472a8cb12d3d87a78eb3612" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.17.0+1" +version = "1.17.0+3" [[deps.Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] @@ -3952,7 +3964,7 @@ version = "2.39.0+0" deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "b9ead2d2bdb27330545eb14234a2e300da61232e" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+1" +version = "1.5.0+3" [[deps.Zlib_jll]] deps = ["Libdl"] @@ -3961,15 +3973,15 @@ version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "555d1076590a6cc2fdee2ef1469451f872d8b41b" +git-tree-sha1 = "622cf78670d067c738667aaa96c553430b65e269" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.6+1" +version = "1.5.7+0" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "c7dc3148a64d1cd3768c29b3db5972d1c302661b" +git-tree-sha1 = "0b3c944f5d2d8b466c5d20a84c229c17c528f49e" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.73" +version = "0.6.75" weakdeps = ["Colors", "Distances", "Tracker"] [deps.Zygote.extensions] @@ -4005,13 +4017,13 @@ version = "3.1.1+1" deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "46bf7be2917b59b761247be3f317ddf75e50e997" uuid = "477f73a3-ac25-53e9-8cc3-50b2fa2566f0" -version = "1.1.2+0" +version = "1.1.2+2" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" +git-tree-sha1 = "522c1df09d05a71785765d19c9524661234738e9" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.9.0+0" +version = "3.11.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -4050,9 +4062,9 @@ version = "1.18.0+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "b70c870239dc3d7bc094eb2d6be9b73d27bef280" +git-tree-sha1 = "b7bfd3ab9d2c58c3829684142f5804e4c6499abc" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.44+0" +version = "1.6.45+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -4096,6 +4108,6 @@ version = "3.5.0+0" [[deps.xkbcommon_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" +git-tree-sha1 = "63406453ed9b33a0df95d570816d5366c92b7809" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" +version = "1.4.1+2"