Align comments with clang-format-16

Running `clang-format-16` locally aligns trailing comments differently than what's already in `dev`. Furthermore, the directive `AlignTrailingComments` changed from its old value (boolean) to one with more parameters. This PR updates `.clang-format` for that directive and includes the files changed by the formatting. Hopefully this reduces any variation between local and CI installations.

.clang-format

@@ -7,7 +7,10 @@ AlignConsecutiveAssignments: false
 AlignConsecutiveDeclarations: false
 AlignEscapedNewlinesLeft: true
 AlignOperands:   true
-AlignTrailingComments: true
+#AlignTrailingComments: true
+AlignTrailingComments:
+  Kind: Always
+  OverEmptyLines: 0
 AllowAllParametersOfDeclarationOnNextLine: true
 AllowShortBlocksOnASingleLine: false
 AllowShortCaseLabelsOnASingleLine: false