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corrected some links
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dbrg77 committed Mar 3, 2024
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2 changes: 1 addition & 1 deletion methods_html/CH-ATAC-seq.html
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<h1><a href="https://doi.org/10.1016/j.devcel.2024.01.015" target="_blank">CH-ATAC-seq</a></h1>

<p><info>CH-ATAC-seq is like <a href="https://teichlab.github.io/scg_lib_structs/methods_html/sci-ATAC-seq3.html" target="_blank">sci-ATAC-seq3</a> that uses combinatorial indexing to achieve single cell chromatin accessibility profiling. They difference is that CH-ATAC-seq uses barcoded Tn5 with to add the first-level barcode. Then subsequent rounds of barcodes are added through hybridisation. The oligo sequences here are taken from the <a href="../data/CH-ATAC-seq/CH-ATAC-seq_SupplementaryTable1.xlsx" target="_blank">Supplementary Table 1</a> from the paper, which is designed to work on the BGI system.</info></p>
<p><info>CH-ATAC-seq is like <a href="https://teichlab.github.io/scg_lib_structs/methods_html/sci-ATAC-seq_family.html" target="_blank">sci-ATAC-seq3</a> that uses combinatorial indexing to achieve single cell chromatin accessibility profiling. They difference is that CH-ATAC-seq uses barcoded Tn5 with to add the first-level barcode. Then subsequent rounds of barcodes are added through hybridisation. The oligo sequences here are taken from the <a href="../data/CH-ATAC-seq/CH-ATAC-seq_SupplementaryTable1.xlsx" target="_blank">Supplementary Table 1</a> from the paper, which is designed to work on the BGI system.</info></p>

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2 changes: 1 addition & 1 deletion methods_html/itChIP-seq.html
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Expand Up @@ -48,7 +48,7 @@ <h2>Adapter and primer sequences:</h2>

<h2>Step-by-step library generation</h2>
<h3>(1) Anneal Barcoded Tn5 sequences s5/s7 and Tn5 binding site 19-bp Mosaic End (ME) bottom strand to assemble the barcoded Tn5 transposome, sort single nulcei into well plates, perform tagmentation to barcode each nulcei:</h3>
<img src="../data/sci-ATAC-seq_Tn5.svg" alt="Tn5 dimer" style="width:800px;height:450px;">
<img src="../data/sci-ATAC-seq_family/sci-ATAC-seq_Tn5.svg" alt="Tn5 dimer" style="width:800px;height:450px;">

<h3>(2) Sort limited nulcei into wells, and perform tagmentation using barcoded Tn5 transposome:</h3>
<pre>
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