From 153a9ea1aea9ab2512ced92d7a94cb80a334d68c Mon Sep 17 00:00:00 2001
From: Alexander Hampel <ahampel@flatironinstitute.org>
Date: Tue, 5 Mar 2024 10:02:20 -0500
Subject: [PATCH] [build] add numpydoc as dependency in docker

---
 Docker/github_ci_dockerfile      | 2 +-
 Docker/mpich_dockerfile          | 2 +-
 Docker/mpich_dockerfile_vasp5    | 2 +-
 Docker/openmpi_dockerfile        | 2 +-
 packaging/pypi/pyproject.toml.in | 1 -
 requirements.txt                 | 1 -
 6 files changed, 4 insertions(+), 6 deletions(-)

diff --git a/Docker/github_ci_dockerfile b/Docker/github_ci_dockerfile
index 53fa9d22..ff372735 100644
--- a/Docker/github_ci_dockerfile
+++ b/Docker/github_ci_dockerfile
@@ -40,8 +40,8 @@ RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y \
       python3-nbsphinx \
       python3-notebook \
       python3-numpy \
+      python3-numpydoc \
       python3-pip \
-      python3-pytest \
       python3-scipy \
       python3-shapely \
       python3-skimage \
diff --git a/Docker/mpich_dockerfile b/Docker/mpich_dockerfile
index 54ee5308..9cd60a71 100644
--- a/Docker/mpich_dockerfile
+++ b/Docker/mpich_dockerfile
@@ -51,9 +51,9 @@ RUN apt-get update && \
     python3-nbsphinx \
     python3-notebook \
     python3-numpy \
+    python3-numpydoc \
     python3-pandas \
     python3-pip \
-    python3-pytest \
     python3-scipy \
     python3-setuptools \
     python3-shapely \
diff --git a/Docker/mpich_dockerfile_vasp5 b/Docker/mpich_dockerfile_vasp5
index 17479a8d..4cce56fb 100644
--- a/Docker/mpich_dockerfile_vasp5
+++ b/Docker/mpich_dockerfile_vasp5
@@ -72,12 +72,12 @@ RUN pip3 install --no-cache-dir \
     decorator \
     jupyter \
     ipywidgets \
-    pytest \
     pylint \
     pandas \
     shapely \
     monty \
     mpi4py \
+    numpydoc \
     pymatgen \
     Jinja2 \
     Mako \
diff --git a/Docker/openmpi_dockerfile b/Docker/openmpi_dockerfile
index 59201940..a183e48f 100644
--- a/Docker/openmpi_dockerfile
+++ b/Docker/openmpi_dockerfile
@@ -57,10 +57,10 @@ RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-ins
       python3-nbsphinx \
       python3-notebook \
       python3-numpy \
+      python3-numpydoc \
       python3-pandas \
       python3-pip \
       python3-pymatgen \
-      python3-pytest \
       python3-scipy \
       python3-shapely \
       python3-skimage \
diff --git a/packaging/pypi/pyproject.toml.in b/packaging/pypi/pyproject.toml.in
index ec88af59..e6ef8199 100644
--- a/packaging/pypi/pyproject.toml.in
+++ b/packaging/pypi/pyproject.toml.in
@@ -23,7 +23,6 @@ classifiers = [
 dependencies = [
     "numpy",
     "scipy",
-    "pytest",
     "scikit-image",
     "argparse"
 ]
diff --git a/requirements.txt b/requirements.txt
index 12173505..21644e42 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -3,7 +3,6 @@ numpy
 scipy
 argparse
 scikit-image
-pytest
 numpydoc
 # From python 3.11 and newer, toml is part of standard implementation
 tomli