From ea7fe2166e3ab182cc1024604d3c793e1a632831 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Fabian=20Ho=CC=88rst?= <fabian.hoerst@rub.de>
Date: Tue, 2 Apr 2024 14:41:17 +0200
Subject: [PATCH] Fixing environment

---
 .github/workflows/test_build.yml |  2 ++
 environment.yaml                 | 32 ++++++++++++++++----------------
 2 files changed, 18 insertions(+), 16 deletions(-)

diff --git a/.github/workflows/test_build.yml b/.github/workflows/test_build.yml
index 4be9277..33779da 100644
--- a/.github/workflows/test_build.yml
+++ b/.github/workflows/test_build.yml
@@ -40,5 +40,7 @@ jobs:
       run: python -m pytest -vv -s ./tests/test_macenko_module
     - name : Run Core Tests
       run: python -m pytest -vv -s ./tests/test_core_modules
+    - name : Run Core Tests
+      run: python -m pytest -vv -s ./tests/test_dicom_module
     - name : Run Dataset and Dataloader Tests
       run: python -m pytest -vv -s ./tests/test_pytorch_dataset
diff --git a/environment.yaml b/environment.yaml
index 5cc910f..614815d 100644
--- a/environment.yaml
+++ b/environment.yaml
@@ -1,4 +1,4 @@
-name: pathopatch_env
+name: pathopatch_env_2
 channels:
   - conda-forge
   - defaults
@@ -8,28 +8,28 @@ dependencies:
   - pip=23.0
   - python-javabridge
   - pip:
-    - Pillow==9.5.0
-    - PyYAML==6.0
+    - Pillow>=9.5.0
+    - PyYAML
     - Shapely==1.8.5.post1
-    - black==23.1.0
-    - colorama==0.4.6
-    - flake8-html==0.4.3
-    - flake8==6.0.0
-    - genbadge==1.1.0
+    - black
+    - colorama
+    - flake8-html
+    - flake8
+    - genbadge
     - geojson>=3.0.0
-    - matplotlib==3.7.1
-    - natsort==8.4.0
+    - matplotlib
+    - natsort
     - numpy>1.22,<1.24
     - opencv_python_headless==4.5.4.58
-    - openslide_python==1.2.0
-    - pandas==1.5.3
-    - pre-commit==3.0.3
+    - openslide_python>=1.3.1
+    - pandas
+    - pre-commit
     - pydantic==1.10.4
     - pytest==7.4.4
     - pytest-sugar==0.9.7
     - rasterio==1.3.5.post1
-    - scikit-image==0.19.3
-    - torchvision==0.16.2
-    - tqdm==4.65.0
+    - scikit-image
+    - torchvision
+    - tqdm
     - wsidicomizer==0.13.2
     - wsidicom==0.20.4