diff --git a/.github/workflows/test_build.yml b/.github/workflows/test_build.yml index 4be9277..df6c72d 100644 --- a/.github/workflows/test_build.yml +++ b/.github/workflows/test_build.yml @@ -27,7 +27,7 @@ jobs: miniconda-version: "latest" channels: conda-forge, defaults python-version: 3.10.12 - environment-file: environment.yaml + environment-file: environment_build.yaml activate-environment: pathopatch_env use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! auto-update-conda: true diff --git a/environment_build.yaml b/environment_build.yaml new file mode 100644 index 0000000..2f9849d --- /dev/null +++ b/environment_build.yaml @@ -0,0 +1,32 @@ +name: pathopatch_env_2024 +channels: + - defaults + - conda-forge +dependencies: + - python>=3.9.0,<3.12 + - openslide=3.4.1 + - pip>22.0 + - pip: + - Pillow==9.5.0 + - PyYAML==6.0 + - Shapely==1.8.5.post1 + - black==23.1.0 + - colorama==0.4.6 + - flake8-html==0.4.3 + - flake8==6.0.0 + - genbadge==1.1.0 + - geojson>=3.0.0 + - matplotlib==3.7.1 + - natsort==8.4.0 + - numpy>1.22,<1.24 + - opencv_python_headless==4.5.4.58 + - openslide_python==1.2.0 + - pandas==1.5.3 + - pre-commit==3.0.3 + - pydantic==1.10.4 + - pytest==7.4.4 + - pytest-sugar==0.9.7 + - rasterio==1.3.5.post1 + - scikit-image==0.19.3 + - torchvision==0.16.2 + - tqdm==4.65.0