[BUG]Dependency issues

[phonez]

Describe the bug
package gensim is seemingly not supported for python3.10 when using pip install autogl in python3.10
func graph_number_of_cliques is deprecated since networkx3.1
func append for DataFrame in pandas since pandas1.4.0

Environment (please complete the following information):

• OS: Ubuntu 18.04.6 LTS
• python version: 3.9.18
• autogl version: 0.4.0
• pip list:

Package                  Version
------------------------ ----------------
astor                    0.8.1
asttokens                2.4.1
autogl                   0.4.0
backcall                 0.2.0
bayesian-optimization    1.4.3
certifi                  2023.11.17
charset-normalizer       3.3.2
chocolate                0.0.2
cloudpickle              3.0.0
colorama                 0.4.6
contextlib2              21.6.0
contourpy                1.2.0
cycler                   0.12.1
debugpy                  1.6.7
decorator                5.1.1
deeprobust               0.2.9
dill                     0.3.7
dnspython                2.5.0
entrypoints              0.4
executing                2.0.1
filelock                 3.13.1
fonttools                4.47.2
fsspec                   2023.12.2
future                   0.18.3
gensim                   3.8.3
hyperopt                 0.1.2
idna                     3.6
imageio                  2.33.1
importlib-metadata       7.0.1
importlib-resources      6.1.1
ipykernel                6.14.0
ipython                  8.4.0
jedi                     0.19.1
Jinja2                   3.1.3
joblib                   1.3.2
json-tricks              3.17.3
jupyter-client           7.0.6
jupyter_core             5.7.1
kiwisolver               1.4.5
lazy_loader              0.3
lightgbm                 4.2.0
littleutils              0.2.2
llvmlite                 0.41.1
MarkupSafe               2.1.4
matplotlib               3.8.2
matplotlib-inline        0.1.6
mpmath                   1.3.0
nest_asyncio             1.6.0
NetLSD                   1.0.2
networkx                 3.0
nni                      2.8
numba                    0.58.1
numpy                    1.26.3
nvidia-cublas-cu12       12.1.3.1
nvidia-cuda-cupti-cu12   12.1.105
nvidia-cuda-nvrtc-cu12   12.1.105
nvidia-cuda-runtime-cu12 12.1.105
nvidia-cudnn-cu12        8.9.2.26
nvidia-cufft-cu12        11.0.2.54
nvidia-curand-cu12       10.3.2.106
nvidia-cusolver-cu12     11.4.5.107
nvidia-cusparse-cu12     12.1.0.106
nvidia-nccl-cu12         2.18.1
nvidia-nvjitlink-cu12    12.3.101
nvidia-nvtx-cu12         12.1.105
ogb                      1.3.6
outdated                 0.2.2
packaging                23.2
pandas                   1.3.5
parso                    0.8.3
pexpect                  4.8.0
pickleshare              0.7.5
pillow                   10.2.0
pip                      23.3.1
platformdirs             4.1.0
prettytable              3.9.0
prompt-toolkit           3.0.42
protobuf                 4.25.2
psutil                   5.9.0
ptyprocess               0.7.0
pure-eval                0.2.2
Pygments                 2.17.2
pymongo                  4.6.1
pyparsing                3.1.1
python-dateutil          2.8.2
PythonWebHDFS            0.2.3
pytz                     2023.3.post1
PyYAML                   6.0.1
pyzmq                    19.0.2
requests                 2.31.0
responses                0.24.1
schema                   0.7.5
scikit-image             0.22.0
scikit-learn             1.4.0
scipy                    1.12.0
setuptools               68.2.2
simplejson               3.19.2
six                      1.16.0
smart-open               6.4.0
stack-data               0.6.2
sympy                    1.12
tabulate                 0.9.0
tensorboardX             2.6.2.2
texttable                1.7.0
threadpoolctl            3.2.0
tifffile                 2023.12.9
torch                    2.1.2
torch_geometric          2.4.0
torch-scatter            2.1.2+pt21cu121
torch-sparse             0.6.18+pt21cu121
torchvision              0.16.2
tornado                  6.1
tqdm                     4.66.1
traitlets                5.14.1
triton                   2.1.0
typeguard                4.1.5
typing_extensions        4.9.0
tzdata                   2023.4
urllib3                  2.1.0
wcwidth                  0.2.13
websockets               12.0
wheel                    0.41.2
zipp                     3.17.0

[Martins6]

I had the same problem. Using Linux Mint & python 3.10. Commenting here for more support!

[amoschoomy]

same error as described in #150, gensim dependency needs to be bumped to its latest version, until then it can only be solved by manually installing gensim latest version