From 1b05540376b0cdc3be7d9957d1edbc67a5f8929c Mon Sep 17 00:00:00 2001 From: Asim Regmi <54924215+asimregmi@users.noreply.github.com> Date: Tue, 17 Oct 2023 10:28:28 -0500 Subject: [PATCH 1/4] WP-66: refactor data files components 2 (#885) * Refactored some variables and props to include proptypes * fixed linting errors * fixed DataFiles prop variable names * Added proptypes is required for projectId --- .../components/DataFiles/DataFilesModals/DataFilesCopyModal.jsx | 2 +- .../DataFiles/DataFilesModals/DataFilesSelectModal.jsx | 2 +- .../DataFilesProjectMembers/DataFilesProjectMembers.jsx | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/client/src/components/DataFiles/DataFilesModals/DataFilesCopyModal.jsx b/client/src/components/DataFiles/DataFilesModals/DataFilesCopyModal.jsx index bebffdf3f..c4cd26d68 100644 --- a/client/src/components/DataFiles/DataFilesModals/DataFilesCopyModal.jsx +++ b/client/src/components/DataFiles/DataFilesModals/DataFilesCopyModal.jsx @@ -142,7 +142,7 @@ const DataFilesCopyModal = React.memo(() => { Destination { Select Input Date: Wed, 18 Oct 2023 11:40:23 -0500 Subject: [PATCH 2/4] build(deps-dev): bump @babel/traverse from 7.19.0 to 7.23.2 in /client (#889) Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 7.19.0 to 7.23.2. - [Release notes](https://github.com/babel/babel/releases) - [Changelog](https://github.com/babel/babel/blob/main/CHANGELOG.md) - [Commits](https://github.com/babel/babel/commits/v7.23.2/packages/babel-traverse) --- updated-dependencies: - dependency-name: "@babel/traverse" dependency-type: indirect ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- client/package-lock.json | 296 ++++++++++++++++++++------------------- 1 file changed, 150 insertions(+), 146 deletions(-) diff --git a/client/package-lock.json b/client/package-lock.json index 530f88263..98a48ba2e 100644 --- a/client/package-lock.json +++ b/client/package-lock.json @@ -134,12 +134,13 @@ } }, "node_modules/@babel/code-frame": { - "version": "7.18.6", - "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.18.6.tgz", - "integrity": "sha512-TDCmlK5eOvH+eH7cdAFlNXeVJqWIQ7gW9tY1GJIpUtFb6CmjVyq2VM3u71bOyR8CRihcCgMUYoDNyLXao3+70Q==", + "version": "7.22.13", + "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.22.13.tgz", + "integrity": "sha512-XktuhWlJ5g+3TJXc5upd9Ks1HutSArik6jf2eAjYFyIOf4ej3RN+184cZbzDvbPnuTJIUhPKKJE3cIsYTiAT3w==", "dev": true, "dependencies": { - "@babel/highlight": "^7.18.6" + "@babel/highlight": "^7.22.13", + "chalk": "^2.4.2" }, "engines": { "node": ">=6.9.0" @@ -185,13 +186,14 @@ } }, "node_modules/@babel/generator": { - 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"@jridgewell/resolve-uri": "^3.0.3", - "@jridgewell/sourcemap-codec": "^1.4.10" + "@jridgewell/resolve-uri": "^3.1.0", + "@jridgewell/sourcemap-codec": "^1.4.14" } }, "@material-ui/core": { From c522d1c6ff7221c351b8fa33c8a3810fc6dc952e Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 18 Oct 2023 11:40:42 -0500 Subject: [PATCH 3/4] build(deps): bump urllib3 from 1.26.17 to 1.26.18 in /server (#888) Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.17 to 1.26.18. - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](https://github.com/urllib3/urllib3/compare/1.26.17...1.26.18) --- updated-dependencies: - dependency-name: urllib3 dependency-type: indirect ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- server/poetry.lock | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/server/poetry.lock b/server/poetry.lock index 3e25cce44..aaf7d1064 100644 --- a/server/poetry.lock +++ b/server/poetry.lock @@ -2619,13 +2619,13 @@ files = [ [[package]] name = "urllib3" -version = "1.26.17" +version = "1.26.18" description = "HTTP library with thread-safe connection pooling, file post, and more." optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" files = [ - {file = "urllib3-1.26.17-py2.py3-none-any.whl", hash = "sha256:94a757d178c9be92ef5539b8840d48dc9cf1b2709c9d6b588232a055c524458b"}, - {file = "urllib3-1.26.17.tar.gz", hash = "sha256:24d6a242c28d29af46c3fae832c36db3bbebcc533dd1bb549172cd739c82df21"}, + {file = "urllib3-1.26.18-py2.py3-none-any.whl", hash = "sha256:34b97092d7e0a3a8cf7cd10e386f401b3737364026c45e622aa02903dffe0f07"}, + {file = "urllib3-1.26.18.tar.gz", hash = "sha256:f8ecc1bba5667413457c529ab955bf8c67b45db799d159066261719e328580a0"}, ] [package.extras] From f12180a8b9970b0101efb4394f7f5bbe65129a1c Mon Sep 17 00:00:00 2001 From: Shayan Khan Date: Thu, 19 Oct 2023 11:34:37 -0500 Subject: [PATCH 4/4] task/WP-164 Implement Workspace Search (#886) * simplified and fixed search on project listing and project file listing * small fix * fix project file search bug, added search on project id * fixing a test --- server/portal/apps/projects/views.py | 39 +++++++++++++++---- server/portal/apps/search/tasks.py | 7 +++- server/portal/libs/agave/operations.py | 2 +- .../portal/libs/agave/operations_unit_test.py | 2 +- server/portal/libs/elasticsearch/docs/base.py | 38 ++++++------------ server/portal/libs/elasticsearch/utils.py | 22 +++++++++++ 6 files changed, 73 insertions(+), 37 deletions(-) diff --git a/server/portal/apps/projects/views.py b/server/portal/apps/projects/views.py index 8baf098d3..ca03a8479 100644 --- a/server/portal/apps/projects/views.py +++ b/server/portal/apps/projects/views.py @@ -17,7 +17,9 @@ list_projects, get_project, create_shared_workspace,\ update_project, get_workspace_role, change_user_role, add_user_to_workspace,\ remove_user, transfer_ownership - +from portal.apps.search.tasks import tapis_project_listing_indexer +from portal.libs.elasticsearch.indexes import IndexedProject +from elasticsearch_dsl import Q LOGGER = logging.getLogger(__name__) @@ -63,12 +65,35 @@ def get(self, request): } ``` """ - # TODOv3: Support Elasticsearch queries for V3 projects https://jira.tacc.utexas.edu/browse/TV3-160 - # query_string = request.GET.get('query_string') - # offset = int(request.GET.get('offset', 0)) - # limit = int(request.GET.get('limit', 100)) - client = request.user.tapis_oauth.client - listing = list_projects(client) + + query_string = request.GET.get('query_string') + offset = int(request.GET.get('offset', 0)) + limit = int(request.GET.get('limit', 100)) + + listing = [] + + if query_string: + search = IndexedProject.search() + + ngram_query = Q("query_string", query=query_string, + fields=["title", "id"], + minimum_should_match='100%', + default_operator='or') + + wildcard_query = Q("wildcard", title=f'*{query_string}*') | Q("wildcard", id=f'*{query_string}*') + + search = search.query(ngram_query | wildcard_query) + search = search.extra(from_=int(offset), size=int(limit)) + + res = search.execute() + hits = [hit.to_dict() for hit in res] + listing = hits + else: + client = request.user.tapis_oauth.client + listing = list_projects(client) + + tapis_project_listing_indexer.delay(listing) + return JsonResponse({"status": 200, "response": listing}) def post(self, request): # pylint: disable=no-self-use diff --git a/server/portal/apps/search/tasks.py b/server/portal/apps/search/tasks.py index 6dabd8725..61bf00a2e 100644 --- a/server/portal/apps/search/tasks.py +++ b/server/portal/apps/search/tasks.py @@ -3,7 +3,7 @@ from django.conf import settings from celery import shared_task from portal.libs.agave.utils import user_account, service_account -from portal.libs.elasticsearch.utils import index_listing +from portal.libs.elasticsearch.utils import index_listing, index_project_listing from portal.apps.users.utils import get_tas_allocations from portal.apps.projects.models.metadata import ProjectMetadata from portal.libs.elasticsearch.docs.base import (IndexedAllocation, @@ -78,3 +78,8 @@ def index_project(self, project_id): project_doc = IndexedProject(**project_dict) project_doc.meta.id = project_id project_doc.save() + + +@shared_task(bind=True, max_retries=3, queue='default') +def tapis_project_listing_indexer(self, projects): + index_project_listing(projects) diff --git a/server/portal/libs/agave/operations.py b/server/portal/libs/agave/operations.py index 0131dcef8..83264a1a8 100644 --- a/server/portal/libs/agave/operations.py +++ b/server/portal/libs/agave/operations.py @@ -139,7 +139,7 @@ def search(client, system, path='', offset=0, limit=100, query_string='', filter if filter: search = search.filter(filter_query) - search = search.filter('prefix', **{'path._exact': path}) + search = search.filter('prefix', **{'path._exact': path.strip('/')}) search = search.filter('term', **{'system._exact': system}) search = search.extra(from_=int(offset), size=int(limit)) res = search.execute() diff --git a/server/portal/libs/agave/operations_unit_test.py b/server/portal/libs/agave/operations_unit_test.py index 269826025..81ddfaa85 100644 --- a/server/portal/libs/agave/operations_unit_test.py +++ b/server/portal/libs/agave/operations_unit_test.py @@ -74,7 +74,7 @@ def test_search(self, mock_search, mock_listing): "name._exact, name._pattern"], default_operator='and')) - mock_search().query().filter.assert_called_with('prefix', **{'path._exact': '/path'}) + mock_search().query().filter.assert_called_with('prefix', **{'path._exact': 'path'}) mock_search().query().filter().filter.assert_called_with('term', **{'system._exact': 'test.system'}) mock_search().query().filter().filter().extra.assert_called_with(from_=int(0), size=int(100)) self.assertEqual(search_res, {'listing': diff --git a/server/portal/libs/elasticsearch/docs/base.py b/server/portal/libs/elasticsearch/docs/base.py index 9d17e3315..c52b36be7 100644 --- a/server/portal/libs/elasticsearch/docs/base.py +++ b/server/portal/libs/elasticsearch/docs/base.py @@ -17,37 +17,21 @@ class IndexedProject(Document): + id = Keyword(fields={'_exact': Keyword()}) title = Text(fields={'_exact': Keyword()}) description = Text() - created = Date() - lastModified = Date() - projectId = Keyword() + path = Text() + name = Text() + host = Text() owner = Object( - properties={ - 'username': Keyword(), - 'fullName': Text() - } - ) - pi = Object( - properties={ - 'username': Keyword(), - 'fullName': Text() - } - ) - coPIs = Object( - multi=True, - properties={ - 'username': Keyword(), - 'fullName': Text() - } - ) - teamMembers = Object( - multi=True, - properties={ - 'username': Keyword(), - 'fullName': Text() - } + properties={ + 'username': Keyword(), + 'firstName': Text(), + 'lastName': Text(), + 'email': Text() + } ) + updated = Date() @classmethod def from_id(cls, projectId): diff --git a/server/portal/libs/elasticsearch/utils.py b/server/portal/libs/elasticsearch/utils.py index cd2c2cc75..90666209f 100644 --- a/server/portal/libs/elasticsearch/utils.py +++ b/server/portal/libs/elasticsearch/utils.py @@ -219,3 +219,25 @@ def index_listing(files): }) bulk(client, ops) + + +def index_project_listing(projects): + from portal.libs.elasticsearch.docs.base import IndexedProject + + idx = IndexedProject.Index.name + client = get_connection('default') + ops = [] + + for _project in projects: + project_dict = dict(_project) + project_dict['updated'] = current_time() + project_uuid = get_sha256_hash(project_dict['id']) + ops.append({ + '_index': idx, + '_id': project_uuid, + 'doc': project_dict, + '_op_type': 'update', + 'doc_as_upsert': True + }) + + bulk(client, ops)