Problem loading E. coli ec model #102
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davidendron
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Hello
I'm relatively new to computational modelling.
I'm doing some predictions using genome-scale models and I'd like to use the E. coli eciML1515.xml model.
I'm getting the error shown below while trying to load the xml file. I am using cobra 0.25.0
After importing cobra, I run "model = cobra.io.read_sbml_model('eciML1515.xml')" and the following error shows:
CobraSBMLError: Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the
cobra.io.sbml.validate_sbml_model
function or via the online validator at http://sbml.org/validator .(model, errors) = validate_sbml_model(filename)
If the model is valid and cannot be read please open an issue at https://github.com/opencobra/cobrapy/issues .
Any idea what might be the problem?
I appreciate any help.
David
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