diff --git a/data/deprecatedIdentifiers/deprecatedMetabolites.tsv b/data/deprecatedIdentifiers/deprecatedMetabolites.tsv index d935bba1..ffd2c7f7 100644 --- a/data/deprecatedIdentifiers/deprecatedMetabolites.tsv +++ b/data/deprecatedIdentifiers/deprecatedMetabolites.tsv @@ -2263,3 +2263,11 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM02158n" "MAM02158" "" "" "" "" "124985" "" "CE2011" "" "CE2011" "MNXM57006" "" "m02158n" "MAM00678c" "MAM00678" "" "" "" "" "22833562" "" "CE2435" "" "dec24dicoa" "MNXM1601" "" "m00678c" "MAM03035c" "MAM03035" "" "" "" "" "16019966" "" "CE5121" "" "dece3coa" "MNXM90096" "" "m03035c" +"MAM03274m" "MAM03274" "4hexdtricoa" "" "" "" "" "" "" "" "4hexdtricoa" "" "" "4hexdtricoa_m" +"MAM03653m" "MAM03653" "hexdectecoa" "" "" "" "" "" "" "" "hexdectecoa" "" "" "hexdectecoa_m" +"MAM03221m" "MAM03221" "3hexdtricoa" "" "" "" "" "" "" "" "3hexdtricoa" "" "" "3hexdtricoa_m" +"MAM03182m" "MAM03182" "2hexdtricoa" "" "" "" "" "" "" "" "2hexdtricoa" "" "" "2hexdtricoa_m" +"MAM03978m" "MAM03978" "tetdecdicoa" "" "" "" "21252281" "" "" "" "tetdecdicoa" "" "" "tetdecdicoa_m" +"MAM03203m" "MAM03203" "3ddecdicoa" "" "" "" "5280771" "" "" "" "3ddecdicoa" "" "" "3ddecdicoa_m" +"MAM02698m" "MAM02698" "2ddecdicoa" "" "" "" "5280770" "" "" "" "2ddecdicoa" "" "" "2ddecdicoa_m" +"MAM03650m" "MAM03650" "hexddcoa" "" "" "" "" "" "" "" "hexddcoa" "" "" "hexddcoa_m" diff --git a/data/deprecatedIdentifiers/deprecatedReactions.tsv b/data/deprecatedIdentifiers/deprecatedReactions.tsv index b5600413..e92d5aae 100644 --- a/data/deprecatedIdentifiers/deprecatedReactions.tsv +++ b/data/deprecatedIdentifiers/deprecatedReactions.tsv @@ -284,4 +284,14 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR04005" "" "" "" "" "" "RE3627C" "" "" "" "" 0 "" "" "RE3627C" "MAR05187" "" "FAOXC15NADx" "" "" "" "FAOXC15NADx" "MNXR99293" "" "" "" 0 "" "" "FAOXC15NADx" "MAR05186" "" "FAOXC15NADPx" "" "" "" "FAOXC15NADPx" "MNXR99292" "" "" "" 0 "" "" "FAOXC15NADPx" +"MAR05358" "" "FAOXC183C163Gm" "" "" "" "FAOXC183C163Gm" "" "" "" "" 0 "" "" "FAOXC183C163Gm" +"MAR05195" "" "FAOXC163C164Gm" "" "" "" "FAOXC163C164Gm;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC163C164Gm;HMR_3422;MAR03422" +"MAR05302" "" "FAOXC164GC163m" "" "" "" "FAOXC164GC163m;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC164GC163m;HMR_3422;MAR03422" +"MAR05229" "" "FAOXC163Gm" "" "" "" "FAOXC163Gm;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC163Gm;HMR_3422;MAR03422" +"MAR05208" "" "FAOXC163GC142m" "" "" "" "FAOXC163GC142m;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC163GC142m;HMR_3422;MAR03422" +"MAR05356" "" "FAOXC182C162m" "" "" "" "FAOXC182C162m" "" "" "" "" 0 "" "" "FAOXC182C162m" +"MAR05191" "" "FAOXC162C142m" "" "" "" "FAOXC162C142m" "" "" "" "" 0 "" "" "FAOXC162C142m" +"MAR05123" "" "FAOXC142C122m" "" "" "" "FAOXC142C122m;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC142C122m;HMR_3422;MAR03422" +"MAR05075" "" "FAOXC122m" "" "" "" "FAOXC122m;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC122m;HMR_3422;MAR03422" +"MAR05072" "" "FAOXC122C101m" "" "" "" "FAOXC122C101m;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC122C101m;HMR_3422;MAR03422" "MAR00965" "" "FAOXC2252053m" "" "" "" "FAOXC2252053m" "MNXR99352" "" "" "" 0 "" "" "FAOXC2252053m" diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index f85b59da..96718b3b 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -50465,22 +50465,6 @@ - charge: -4 - inchis: "" - metFrom: "Recon3D" - - !!omap - - id: "MAM02698m" - - name: "2,6-Dodecadienoyl Coenzyme A" - - compartment: "m" - - formula: "C33H50N7O17P3S" - - charge: -4 - - inchis: "" - - metFrom: "Recon3D" - - !!omap - - id: "MAM03203m" - - name: "3,6-Dodecadienoyl Coenzyme A" - - compartment: "m" - - formula: "C33H50N7O17P3S" - - charge: -4 - - inchis: "" - - metFrom: "Recon3D" - !!omap - id: "MAM02698x" - name: "2,6-Dodecadienoyl Coenzyme A" @@ -50545,14 +50529,6 @@ - charge: -4 - inchis: "" - metFrom: "Recon3D" - - !!omap - - id: "MAM03978m" - - name: "5,8-Tetradecadienoyl Coenzyme A" - - compartment: "m" - - formula: "C35H54N7O17P3S" - - charge: -4 - - inchis: "" - - metFrom: "Recon3D" - !!omap - id: "MAM03978x" - name: "5,8-Tetradecadienoyl Coenzyme A" @@ -50601,14 +50577,6 @@ - charge: -4 - inchis: "" - metFrom: "Recon3D" - - !!omap - - id: "MAM03650m" - - name: "7,10-Hexadecadienoyl Coenzyme A" - - compartment: "m" - - formula: "C37H58N7O17P3S" - - charge: -4 - - inchis: "" - - metFrom: "Recon3D" - !!omap - id: "MAM03982m" - name: "Trans7,10-Hexadecadienoyl Coenzyme A" @@ -50633,22 +50601,6 @@ - charge: -4 - inchis: "" - metFrom: "Recon3D" - - !!omap - - id: "MAM03274m" - - name: "4,7,10-Hexadecatrienoyl Coenzyme A" - - compartment: "m" - - formula: "C37H56N7O17P3S" - - charge: -4 - - inchis: "" - - metFrom: "Recon3D" - - !!omap - - id: "MAM03653m" - - name: "2,4,7,10-Hexadecatetraenoyl Coenzyme A" - - compartment: "m" - - formula: "C37H54N7O17P3S" - - charge: -4 - - inchis: "" - - metFrom: "Recon3D" - !!omap - id: "MAM03274x" - name: "4,7,10-Hexadecatrienoyl Coenzyme A" @@ -50665,22 +50617,6 @@ - charge: -4 - inchis: "" - metFrom: "Recon3D" - - !!omap - - id: "MAM03182m" - - name: "2,7,10-Hexadecatrienoyl Coenzyme A" - - compartment: "m" - - formula: "C37H56N7O17P3S" - - charge: -4 - - inchis: "" - - metFrom: "Recon3D" - - !!omap - - id: "MAM03221m" - - name: "3,7,10-Hexadecatrienoyl Coenzyme A" - - compartment: "m" - - formula: "C37H56N7O17P3S" - - charge: -4 - - inchis: "" - - metFrom: "Recon3D" - !!omap - id: "MAM03221x" - name: "3,7,10-Hexadecatrienoyl Coenzyme A" @@ -120882,7 +120818,7 @@ - lower_bound: 0 - upper_bound: 1000 - gene_reaction_rule: "ENSG00000072778 or ENSG00000115361 or ENSG00000117054 or ENSG00000177646" - - rxnNotes: "" + - rxnNotes: "Harpers illustrated Biochemistry (2009) 28th edition page 242, ISBN:9781282335806" - rxnFrom: "HMRdatabase" - eccodes: "1.3.8.7;1.3.8.8;1.3.8.9;1.3.99.-" - references: "PMID:8973539;PMID:10407780;PMID:11356167" @@ -120899,7 +120835,7 @@ - lower_bound: 0 - upper_bound: 1000 - gene_reaction_rule: "ENSG00000084754 and ENSG00000113790 and ENSG00000127884" - - rxnNotes: "" + - rxnNotes: "Harpers illustrated Biochemistry (2009) 28th edition page 242, ISBN:9781282335806" - rxnFrom: "HMRdatabase" - eccodes: "4.2.1.17" - references: "PMID:9920399;PMID:10407780;PMID:7923814;PMID:9568246" @@ -120918,7 +120854,7 @@ - lower_bound: 0 - upper_bound: 1000 - gene_reaction_rule: "ENSG00000072506 and ENSG00000084754 and ENSG00000138796" - - rxnNotes: "" + - rxnNotes: "Harpers illustrated Biochemistry (2009) 28th edition page 242, ISBN:9781282335806" - rxnFrom: "HMRdatabase" - eccodes: "1.1.1.35;1.1.1.211" - references: "PMID:7846063" @@ -120936,7 +120872,7 @@ - lower_bound: 0 - upper_bound: 1000 - gene_reaction_rule: "ENSG00000084754 and ENSG00000138029 and ENSG00000167315" - - rxnNotes: "" + - rxnNotes: "Harpers illustrated Biochemistry (2009) 28th edition page 242, ISBN:9781282335806" - rxnFrom: "HMRdatabase" - eccodes: "2.3.1.16;1.1.1.211" - references: "PMID:10407780;PMID:9920399;PMID:7923814;PMID:9568246" @@ -239272,44 +239208,6 @@ - subsystem: - "Fatty acid oxidation" - confidence_score: 0 - - !!omap - - id: "MAR05072" - - name: "Fatty Acid Beta Oxidation (C12:2->C10:1), Mitochondrial" - - metabolites: !!omap - - MAM00980m: 1 - - MAM01261m: 1 - - MAM01597m: -1 - - MAM02039m: 1 - - MAM02040m: -1 - - MAM02552m: -1 - - MAM02553m: 1 - - MAM02698m: -1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000127884 and ENSG00000138796 and ENSG00000167315" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "PMID:20195903;PMID:20490924;PMID:17143551" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - - !!omap - - id: "MAR05075" - - name: "Isomerization (C12:2), Mitochondrial" - - metabolites: !!omap - - MAM02698m: 1 - - MAM03203m: -1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000167969" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "PMID:15351645" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - !!omap - id: "MAR05081" - name: "Isomerization (C12:2), Peroxisomal" @@ -239660,30 +239558,6 @@ - subsystem: - "Fatty acid oxidation" - confidence_score: 0 - - !!omap - - id: "MAR05123" - - name: "Fatty Acid Beta Oxidation (C14:2->C12:2), Mitochondrial" - - metabolites: !!omap - - MAM01261m: 1 - - MAM01597m: -1 - - MAM01802m: -1 - - MAM01803m: 1 - - MAM02039m: 1 - - MAM02040m: -1 - - MAM02552m: -1 - - MAM02553m: 1 - - MAM03203m: 1 - - MAM03978m: -1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000072778 and ENSG00000084754 and ENSG00000138029" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "PMID:20195903;PMID:20490924;PMID:17143551" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - !!omap - id: "MAR05175" - name: "Fatty Acid Beta Oxidation (C14:2->C12:2), Peroxisomal" @@ -240001,30 +239875,6 @@ - subsystem: - "Fatty acid oxidation" - confidence_score: 0 - - !!omap - - id: "MAR05191" - - name: "Fatty Acid Beta Oxidation (C16:2->C14:2), Mitochondrial" - - metabolites: !!omap - - MAM01261m: 1 - - MAM01597m: -1 - - MAM01802m: -1 - - MAM01803m: 1 - - MAM02039m: 1 - - MAM02040m: -1 - - MAM02552m: -1 - - MAM02553m: 1 - - MAM03650m: -1 - - MAM03978m: 1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000072778 and ENSG00000084754 and ENSG00000138029" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "PMID:20195903;PMID:20490924;PMID:17143551" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - !!omap - id: "MAR05192" - name: "Fatty Acid Beta Oxidation (C16:2->C16:2Oh), Mitochondrial" @@ -240090,24 +239940,6 @@ - subsystem: - "Fatty acid oxidation" - confidence_score: 0 - - !!omap - - id: "MAR05195" - - name: "Fatty Acid Beta Oxidation (C16:3->C16:4), Mitochondrial" - - metabolites: !!omap - - MAM01802m: -1 - - MAM01803m: 1 - - MAM03274m: -1 - - MAM03653m: 1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000072778" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "PMID:17374501" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - !!omap - id: "MAR05196" - name: "Fatty Acid Beta Oxidation (C16:3->C16:4), Peroxisomal" @@ -240126,44 +239958,6 @@ - subsystem: - "Fatty acid oxidation" - confidence_score: 0 - - !!omap - - id: "MAR05208" - - name: "Fatty Acid Beta Oxidation (C16:3->C14:2), Mitochondrial" - - metabolites: !!omap - - MAM01261m: 1 - - MAM01597m: -1 - - MAM02039m: 1 - - MAM02040m: -1 - - MAM02552m: -1 - - MAM02553m: 1 - - MAM03182m: -1 - - MAM03978m: 1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000084754 and ENSG00000138029" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "PMID:20195903;PMID:20490924;PMID:17143551" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - - !!omap - - id: "MAR05229" - - name: "Isomerization (C16:3), Mitochondrial" - - metabolites: !!omap - - MAM03182m: 1 - - MAM03221m: -1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000167969" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "PMID:15351645" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - !!omap - id: "MAR05235" - name: "Isomerization (C16:3), Peroxisomal" @@ -240279,25 +240073,6 @@ - subsystem: - "Fatty acid oxidation" - confidence_score: 0 - - !!omap - - id: "MAR05302" - - name: "Fatty Acid Beta Oxidation (C16:4->C16:3), Mitochondrial" - - metabolites: !!omap - - MAM02039m: -1 - - MAM02554m: 1 - - MAM02555m: -1 - - MAM03221m: 1 - - MAM03653m: -1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000104325" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "PMID:7818482" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - !!omap - id: "MAR05306" - name: "Isomerization (C16:4), Mitochondrial" @@ -240591,30 +240366,6 @@ - subsystem: - "Fatty acid oxidation" - confidence_score: 0 - - !!omap - - id: "MAR05356" - - name: "Fatty Acid Beta Oxidation (C18:2->C16:2), Mitochondrial" - - metabolites: !!omap - - MAM01261m: 1 - - MAM01597m: -1 - - MAM01802m: -1 - - MAM01803m: 1 - - MAM02039m: 1 - - MAM02040m: -1 - - MAM02391m: -1 - - MAM02552m: -1 - - MAM02553m: 1 - - MAM03650m: 1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000072778 and ENSG00000084754 and ENSG00000138029" - - rxnNotes: "Harpers illustrated Biochemistry (2009) 28th edition page 242, ISBN:9781282335806" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - !!omap - id: "MAR05357" - name: "Fatty Acid Beta Oxidation (C18:2->C18:2Oh), Mitochondrial" @@ -240634,30 +240385,6 @@ - subsystem: - "Fatty acid oxidation" - confidence_score: 0 - - !!omap - - id: "MAR05358" - - name: "Fatty Acid Beta Oxidation (C18:3->C16:3), Mitochondrial" - - metabolites: !!omap - - MAM01261m: 1 - - MAM01597m: -1 - - MAM01802m: -1 - - MAM01803m: 1 - - MAM01934m: -1 - - MAM02039m: 1 - - MAM02040m: -1 - - MAM02552m: -1 - - MAM02553m: 1 - - MAM03274m: 1 - - lower_bound: 0 - - upper_bound: 1000 - - gene_reaction_rule: "ENSG00000072778 and ENSG00000084754 and ENSG00000138029" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "PMID:20195903;PMID:20490924;PMID:17143551" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - !!omap - id: "MAR05359" - name: "Fatty Acid Beta Oxidation (C18:3->C16:3), Mitochondrial" @@ -240686,6 +240413,7 @@ - id: "MAR05360" - name: "Fatty Acid Beta Oxidation (C18:4->C16:3), Mitochondrial" - metabolites: !!omap + - MAM00091m: 1 - MAM01261m: 1 - MAM01597m: -1 - MAM02039m: 1 @@ -240693,7 +240421,6 @@ - MAM02552m: -1 - MAM02553m: 1 - MAM03194m: -1 - - MAM03274m: 1 - lower_bound: 0 - upper_bound: 1000 - gene_reaction_rule: "ENSG00000084754 and ENSG00000138029" diff --git a/model/metabolites.tsv b/model/metabolites.tsv index b3ed31cc..7c6f6277 100644 --- a/model/metabolites.tsv +++ b/model/metabolites.tsv @@ -137,7 +137,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM00069m" "MAM00069" "" "" "" "" "" "" "" "" "M00069" "" "m00069m" "m00069m" "MAM00070c" "MAM00070" "" "" "" "" "" "" "" "" "M00070" "" "m00070c" "m00070c" "MAM00071m" "MAM00071" "" "" "" "CHEBI:77548" "" "" "" "" "M00071" "MNXM170117" "m00071m" "m00071m" -"MAM00072m" "MAM00072" "" "" "" "" "" "" "CE2441" "" "CE2441" "" "m00072m" "m00072m" +"MAM00072m" "MAM00072" "hexdectecoa" "" "" "" "" "" "CE2441" "" "CE2441;hexdectecoa" "" "m00072m" "m00072m;hexdectecoa_m;MAM03653m" "MAM00072x" "MAM00072" "" "" "" "" "" "" "CE2441" "" "CE2441" "" "m00072p" "m00072p" "MAM00073m" "MAM00073" "" "" "" "" "" "" "CE2437" "" "CE2437" "" "m00073m" "m00073m" "MAM00073x" "MAM00073" "" "" "" "" "" "" "CE2437" "" "CE2437" "" "m00073p" "m00073p" @@ -159,10 +159,10 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM00087c" "MAM00087" "" "" "" "" "" "" "CE4840" "" "CE4840" "MNXM163965" "m00087c" "m00087c" "MAM00088m" "MAM00088" "dd3coa" "C02944" "" "CHEBI:27989" "16061154" "LMFA07050009" "" "HC01022" "dd3coa" "MNXM14550" "m00088m" "m00088m" "MAM00088x" "MAM00088" "dd3coa" "C02944" "" "CHEBI:27989" "16061154" "LMFA07050009" "" "HC01022" "dd3coa" "MNXM14550" "m00088p" "m00088p" -"MAM00089m" "MAM00089" "" "" "" "" "" "" "CE2442" "" "CE2442" "" "m00089m" "m00089m" +"MAM00089m" "MAM00089" "3hexdtricoa" "" "" "" "" "" "CE2442" "" "CE2442;3hexdtricoa" "" "m00089m" "m00089m;3hexdtricoa_m;MAM03221m" "MAM00089x" "MAM00089" "" "" "" "" "" "" "CE2442" "" "CE2442" "" "m00089p" "m00089p" "MAM00090x" "MAM00090" "" "" "" "" "53481434" "" "CE5938" "" "CE5938" "MNXM31216" "m00090p" "m00090p" -"MAM00091m" "MAM00091" "" "" "" "" "" "" "CE2440" "" "CE2440" "" "m00091m" "m00091m" +"MAM00091m" "MAM00091" "4hexdtricoa" "" "" "" "" "" "CE2440" "" "CE2440;4hexdtricoa" "" "m00091m" "m00091m;4hexdtricoa_m'MAM03274m" "MAM00091x" "MAM00091" "" "" "" "" "" "" "CE2440" "" "CE2440" "" "m00091p" "m00091p" "MAM00092c" "MAM00092" "dcsptn1crn" "" "" "" "" "" "" "" "dcsptn1crn" "MNXM8558" "m00092c" "m00092c" "MAM00092m" "MAM00092" "dcsptn1crn" "" "" "" "" "" "" "" "dcsptn1crn" "MNXM8558" "m00092m" "m00092m" @@ -2556,11 +2556,11 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM01573x" "MAM01573" "" "" "" "" "" "" "" "" "M01573" "" "m01573p" "m01573p" "MAM01574m" "MAM01574" "" "" "" "" "" "" "CE1102" "HC11102" "CE1102" "MNXM167439" "m01574m" "m01574m" "MAM01574x" "MAM01574" "" "" "" "" "" "" "CE1102" "HC11102" "CE1102" "MNXM167439" "m01574p" "m01574p" -"MAM01575m" "MAM01575" "" "C05280" "HMDB0003952" "CHEBI:28002" "5280771" "" "" "" "C05280" "MNXM2008" "m01575m" "m01575m" +"MAM01575m" "MAM01575" "3ddecdicoa" "C05280" "HMDB0003952" "CHEBI:28002" "5280771" "" "" "" "C05280;3ddecdicoa" "MNXM2008" "m01575m" "m01575m;3ddecdicoa;MAM03203m" "MAM01575x" "MAM01575" "" "C05280" "HMDB0003952" "CHEBI:28002" "5280771" "" "" "" "C05280" "MNXM2008" "m01575p" "m01575p" -"MAM01576m" "MAM01576" "" "" "" "" "21252281" "" "CE0785" "" "CE0785" "" "m01576m" "m01576m" +"MAM01576m" "MAM01576" "tetdecdicoa" "" "" "" "21252281" "" "CE0785" "" "CE0785;tetdecdicoa" "" "m01576m" "m01576m;tetdecdicoa_m;MAM03978m" "MAM01576x" "MAM01576" "" "" "" "" "21252281" "" "CE0785" "" "CE0785" "" "m01576p" "m01576p" -"MAM01577m" "MAM01577" "" "" "" "" "" "" "CE0849" "" "CE0849" "" "m01577m" "m01577m" +"MAM01577m" "MAM01577" "hexddcoa" "" "" "" "" "" "CE0849" "" "CE0849;hexddcoa" "" "m01577m" "m01577m;hexddcoa_m;MAM03650m" "MAM01577x" "MAM01577" "" "" "" "" "" "" "CE0849" "" "CE0849" "" "m01577p" "m01577p" "MAM01578c" "MAM01578" "2coum" "C05838" "" "CHEBI:47921" "5280841" "" "" "" "2coum" "MNXM3237" "m01578c" "m01578c" "MAM01579m" "MAM01579" "c2m26dcoa" "C11946" "HMDB0006540" "" "53477855" "" "" "" "c2m26dcoa" "MNXM10980" "m01579m" "m01579m" @@ -5211,7 +5211,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03006c" "MAM03006" "" "" "" "" "" "" "" "" "M03006" "" "m03006c" "m03006c" "MAM03007c" "MAM03007" "" "" "" "" "" "" "CE4842" "" "CE4842" "MNXM165186" "m03007c" "m03007c" "MAM03008c" "MAM03008" "" "" "" "" "" "" "" "" "M03008" "" "m03008c" "m03008c" -"MAM03009m" "MAM03009" "" "" "" "" "" "" "CE2433" "" "CE2433" "" "m03009m" "m03009m" +"MAM03009m" "MAM03009" "2hexdtricoa" "" "" "" "" "" "CE2433" "" "CE2433;2hexdtricoa" "" "m03009m" "m03009m;2hexdtricoa_m;MAM03182m" "MAM03009x" "MAM03009" "" "" "" "" "" "" "CE2433" "" "CE2433" "" "m03009p" "m03009p" "MAM03010m" "MAM03010" "" "" "" "" "" "" "CE2434" "" "CE2434" "" "m03010m" "m03010m" "MAM03010x" "MAM03010" "" "" "" "" "" "" "CE2434" "" "CE2434" "" "m03010p" "m03010p" @@ -5235,7 +5235,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03019x" "MAM03019" "" "" "" "CHEBI:87717" "" "" "" "" "M03019" "" "m03019p" "m03019p" "MAM03020m" "MAM03020" "" "" "" "CHEBI:77549" "" "" "CE2591" "HC12591" "CE2591" "MNXM683714" "m03020m" "m03020m" "MAM03020x" "MAM03020" "" "" "" "CHEBI:77549" "" "" "CE2591" "HC12591" "CE2591" "MNXM683714" "m03020p" "m03020p" -"MAM03021m" "MAM03021" "" "C05279" "HMDB0011123" "CHEBI:28387" "5280770" "" "" "" "C05279" "MNXM2039" "m03021m" "m03021m" +"MAM03021m" "MAM03021" "2ddecdicoa" "C05279" "HMDB0011123" "CHEBI:28387" "5280770" "" "" "" "C05279;2ddecdicoa" "MNXM2039" "m03021m" "m03021m;2ddecdicoa_m;MAM02698m" "MAM03021x" "MAM03021" "" "C05279" "HMDB0011123" "CHEBI:28387" "5280770" "" "" "" "C05279" "MNXM2039" "m03021p" "m03021p" "MAM03022m" "MAM03022" "" "" "" "CHEBI:87701" "" "" "" "" "M03022" "" "m03022m" "m03022m" "MAM03022x" "MAM03022" "" "" "" "CHEBI:87701" "" "" "" "" "M03022" "" "m03022p" "m03022p" @@ -6306,8 +6306,6 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03922x" "MAM03922" "sbcoa" "" "" "CHEBI:76317" "" "" "" "" "sbcoa" "MNXM163582" "" "sbcoa_p" "MAM04004x" "MAM04004" "tmuncoa" "" "" "" "" "" "" "" "tmuncoa" "" "" "tmuncoa_p" "MAM03539m" "MAM03539" "dd5ecoa" "" "" "" "" "" "" "" "dd5ecoa" "" "" "dd5ecoa_m" -"MAM02698m" "MAM02698" "2ddecdicoa" "" "" "" "53480665" "" "" "" "2ddecdicoa" "" "" "2ddecdicoa_m" -"MAM03203m" "MAM03203" "3ddecdicoa" "" "" "" "5280771" "" "" "" "3ddecdicoa" "" "" "3ddecdicoa_m" "MAM02698x" "MAM02698" "2ddecdicoa" "" "" "" "53480665" "" "" "" "2ddecdicoa" "" "" "2ddecdicoa_p" "MAM03203x" "MAM03203" "3ddecdicoa" "" "" "" "5280771" "" "" "" "3ddecdicoa" "" "" "3ddecdicoa_p" "MAM03172m" "MAM03172" "2dodtricoa" "" "" "" "" "" "" "" "2dodtricoa" "" "" "2dodtricoa_m" @@ -6316,23 +6314,17 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03211x" "MAM03211" "3dodtricoa" "" "" "" "" "" "" "" "3dodtricoa" "" "" "3dodtricoa_p" "MAM03490x" "MAM03490" "c12dc" "" "" "" "" "" "" "" "c12dc" "" "" "c12dc_p" "MAM03972m" "MAM03972" "tetd7ecoa" "" "" "" "" "" "" "" "tetd7ecoa" "" "" "tetd7ecoa_m" -"MAM03978m" "MAM03978" "tetdecdicoa" "" "" "" "21252281" "" "" "" "tetdecdicoa" "" "" "tetdecdicoa_m" "MAM03978x" "MAM03978" "tetdecdicoa" "" "" "" "21252281" "" "" "" "tetdecdicoa" "" "" "tetdecdicoa_p" "MAM04041m" "MAM04041" "ttetddcoa" "" "" "" "21252281" "" "" "" "ttetddcoa" "" "" "ttetddcoa_m" "MAM03288m" "MAM03288" "5tedtricoa" "" "" "" "" "" "" "" "5tedtricoa" "" "" "5tedtricoa_m" "MAM03288x" "MAM03288" "5tedtricoa" "" "" "" "" "" "" "" "5tedtricoa" "" "" "5tedtricoa_p" "MAM03492x" "MAM03492" "c14dccoa" "" "" "" "" "" "" "" "c14dccoa" "" "" "c14dccoa_p" "MAM03216m" "MAM03216" "3hdeccoa" "" "" "" "" "" "" "" "3hdeccoa" "" "" "3hdeccoa_m" -"MAM03650m" "MAM03650" "hexddcoa" "" "" "" "" "" "" "" "hexddcoa" "" "" "hexddcoa_m" "MAM03982m" "MAM03982" "thexddcoa" "" "" "" "" "" "" "" "thexddcoa" "" "" "thexddcoa_m" "MAM03182x" "MAM03182" "2hexdtricoa" "" "" "" "" "" "" "" "2hexdtricoa" "" "" "2hexdtricoa_p" "MAM03658m" "MAM03658" "hexdtrcoa" "" "" "" "" "" "" "" "hexdtrcoa" "" "" "hexdtrcoa_m" -"MAM03274m" "MAM03274" "4hexdtricoa" "" "" "" "" "" "" "" "4hexdtricoa" "" "" "4hexdtricoa_m" -"MAM03653m" "MAM03653" "hexdectecoa" "" "" "" "" "" "" "" "hexdectecoa" "" "" "hexdectecoa_m" "MAM03274x" "MAM03274" "4hexdtricoa" "" "" "" "" "" "" "" "4hexdtricoa" "" "" "4hexdtricoa_p" "MAM03653x" "MAM03653" "hexdectecoa" "" "" "" "" "" "" "" "hexdectecoa" "" "" "hexdectecoa_p" -"MAM03182m" "MAM03182" "2hexdtricoa" "" "" "" "" "" "" "" "2hexdtricoa" "" "" "2hexdtricoa_m" -"MAM03221m" "MAM03221" "3hexdtricoa" "" "" "" "" "" "" "" "3hexdtricoa" "" "" "3hexdtricoa_m" "MAM03221x" "MAM03221" "3hexdtricoa" "" "" "" "" "" "" "" "3hexdtricoa" "" "" "3hexdtricoa_p" "MAM03181m" "MAM03181" "2hexdtetcoa" "" "" "" "" "" "" "" "2hexdtetcoa" "" "" "2hexdtetcoa_m" "MAM03181x" "MAM03181" "2hexdtetcoa" "" "" "" "" "" "" "" "2hexdtetcoa" "" "" "2hexdtetcoa_p" diff --git a/model/reactions.tsv b/model/reactions.tsv index 21f4e323..01d8a9bd 100644 --- a/model/reactions.tsv +++ b/model/reactions.tsv @@ -1779,13 +1779,13 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR03448" "" "" "" "" "" "HMR_3448" "" "HMR_3448" "RCR12056" "" 0 "" "" "HMR_3448" "MAR03449" "" "" "RE2986M" "" "" "HMR_3449" "" "HMR_3449" "RCR12057" "" 0 "" "" "HMR_3449" "MAR03450" "" "" "RE2987M" "" "" "HMR_3450" "" "HMR_3450" "RCR12058" "" 0 "" "" "HMR_3450" -"MAR03452" "" "" "RE2997M" "" "" "HMR_3452" "" "HMR_3452" "RCR12060" "" 0 "" "" "HMR_3452" -"MAR03453" "" "" "RE2990M" "" "" "HMR_3453" "" "HMR_3453" "RCR12061" "" 0 "" "" "HMR_3453" -"MAR03454" "" "" "RE2991M" "" "" "HMR_3454" "" "HMR_3454" "RCR12062" "" 0 "" "" "HMR_3454" -"MAR03455" "" "" "RE2989M" "" "" "HMR_3455" "" "HMR_3455" "RCR12063" "" 0 "" "" "HMR_3455" -"MAR03456" "" "" "RE2994M" "" "" "HMR_3456" "" "HMR_3456" "RCR12064" "" 0 "" "" "HMR_3456" -"MAR03457" "" "" "RE2993M" "" "" "HMR_3457" "" "HMR_3457" "RCR12065" "" 0 "" "" "HMR_3457" -"MAR03458" "" "" "RE2992M" "" "" "RE2992M" "" "HMR_3458" "RCR12066" "" 0 "" "" "HMR_3458" +"MAR03452" "" "FAOXC183C163Gm" "RE2997M" "" "" "HMR_3452;FAOXC183C163Gm" "" "HMR_3452" "RCR12060" "" 0 "" "" "HMR_3452;FAOXC183C163Gm;MAR05358" +"MAR03453" "" "FAOXC183C163Gm" "RE2990M" "" "" "HMR_3453;FAOXC183C163Gm" "" "HMR_3453" "RCR12061" "" 0 "" "" "HMR_3453;FAOXC183C163Gm;MAR05358" +"MAR03454" "" "FAOXC183C163Gm" "RE2991M" "" "" "HMR_3454;FAOXC183C163Gm" "" "HMR_3454" "RCR12062" "" 0 "" "" "HMR_3454;FAOXC183C163Gm;MAR05358" +"MAR03455" "" "FAOXC183C163Gm" "RE2989M" "" "" "HMR_3455;FAOXC183C163Gm" "" "HMR_3455" "RCR12063" "" 0 "" "" "HMR_3455;FAOXC183C163Gm;MAR05358" +"MAR03456" "" "FAOXC163C164Gm" "RE2994M" "" "" "HMR_3456;FAOXC163C164Gm;HMR_3422" "" "HMR_3456;HMR_3422" "RCR12064;RCR12667" "" 0 "" "" "HMR_3456;FAOXC163C164Gm;HMR_3422;MAR03422;MAR05195" +"MAR03457" "" "FAOXC164GC163m" "RE2993M" "" "" "HMR_3457;FAOXC164GC163m;HMR_3422" "" "HMR_3457;HMR_3422" "RCR12065;RCR12667" "" 0 "" "" "HMR_3457;FAOXC164GC163m;HMR_3422;MAR03422;MAR05302" +"MAR03458" "" "FAOXC163Gm" "RE2992M" "" "" "RE2992M;FAOXC163Gm;HMR_3422" "" "HMR_3458;HMR_3422" "RCR12066;RCR12667" "" 0 "" "" "HMR_3458;FAOXC163Gm;HMR_3422;MAR03422;MAR05229" "MAR03459" "" "" "RE2985X" "" "" "RE2985X" "" "HMR_3459" "RCR10621" "" 0 "" "" "HMR_3459" "MAR03460" "" "" "RE2995X" "" "" "RE2995X" "" "HMR_3460" "RCR12067" "" 0 "" "" "HMR_3460" "MAR03461" "" "" "RE2996X" "" "" "RE2996X" "" "HMR_3461" "RCR12068" "" 0 "" "" "HMR_3461" @@ -2759,22 +2759,22 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR03236" "" "" "" "" "" "HMR_3236" "" "HMR_3236" "RCR12759" "" 0 "" "" "HMR_3236" "MAR03237" "" "" "" "" "" "HMR_3237" "" "HMR_3237" "RCR12760" "" 0 "" "" "HMR_3237" "MAR03239" "R04100" "DCIm" "" "" "" "DCIm" "MNXR97183" "HMR_3239" "RCR12761" "" 0 "RHEA:23719" "RHEA:23716" "HMR_3239" -"MAR03275" "" "" "RE1516M" "" "R-HSA-109339" "RE1516M" "MNXR125224" "HMR_3275" "RCR12762" "" 0 "" "" "HMR_3275" -"MAR03277" "" "" "RE1523M" "" "" "RE1523M" "" "HMR_3277" "RCR12763" "" 0 "" "" "HMR_3277" -"MAR03278" "" "" "RE0512M" "" "" "RE0512M" "" "HMR_3278" "RCR12764" "" 0 "" "" "HMR_3278" -"MAR03279" "" "" "RE1531M" "" "" "RE1531M" "" "HMR_3279" "RCR12765" "" 0 "" "" "HMR_3279" -"MAR03280" "" "" "RE1517M" "" "" "RE1517M" "" "HMR_3280" "RCR12766" "" 0 "" "" "HMR_3280" -"MAR03281" "" "" "RE1522M" "" "" "RE1522M" "" "HMR_3281" "RCR12767" "" 0 "" "" "HMR_3281" -"MAR03282" "" "" "RE1525M" "" "" "RE1525M" "" "HMR_3282" "RCR12768" "" 0 "" "" "HMR_3282" -"MAR03283" "" "" "RE1532M" "" "" "RE1532M" "" "HMR_3283" "RCR12769" "" 0 "" "" "HMR_3283" -"MAR03284" "" "" "RE1518M" "" "" "RE1518M" "" "HMR_3284" "RCR12770" "" 0 "" "" "HMR_3284" -"MAR03285" "" "" "" "" "" "RE1521M" "" "HMR_3285" "RCR12771" "" 0 "" "" "HMR_3285" -"MAR03286" "" "" "" "" "" "RE1526M" "" "HMR_3286" "RCR12772" "" 0 "" "" "HMR_3286" -"MAR03287" "" "" "" "" "" "RE1533M" "" "HMR_3287" "RCR12773" "" 0 "" "" "HMR_3287" -"MAR03288" "R04756" "" "RE1573M" "" "R-HSA-109338" "HMR_3288;RE1573M" "MNXR109096" "HMR_3288" "RCR12774" "" 0 "" "" "HMR_3288" -"MAR03290" "" "" "RE1520M" "" "R-HSA-109342" "RE1520M" "MNXR125225" "HMR_3290" "RCR12775" "" 0 "" "" "HMR_3290" -"MAR03292" "" "" "RE1527M" "" "" "RE1527M" "" "HMR_3292" "RCR12776" "" 0 "" "" "HMR_3292" -"MAR03293" "" "" "RE1534M" "" "" "RE1534M" "" "HMR_3293" "RCR12777" "" 0 "" "" "HMR_3293" +"MAR03275" "" "FAOXC182C162m" "RE1516M" "" "R-HSA-109339" "RE1516M;FAOXC182C162m" "MNXR125224" "HMR_3275" "RCR12762" "" 0 "" "" "HMR_3275;FAOXC182C162m;MAR05356" +"MAR03277" "" "FAOXC182C162m" "RE1523M" "" "" "RE1523M;FAOXC182C162m" "" "HMR_3277" "RCR12763" "" 0 "" "" "HMR_3277;FAOXC182C162m;MAR05356" +"MAR03278" "" "FAOXC182C162m" "RE0512M" "" "" "RE0512M;FAOXC182C162m" "" "HMR_3278" "RCR12764" "" 0 "" "" "HMR_3278;FAOXC182C162m;MAR05356" +"MAR03279" "" "FAOXC182C162m" "RE1531M" "" "" "RE1531M;FAOXC182C162m" "" "HMR_3279" "RCR12765" "" 0 "" "" "HMR_3279;FAOXC182C162m;MAR05356" +"MAR03280" "" "FAOXC162C142m" "RE1517M" "" "" "RE1517M;FAOXC162C142m" "" "HMR_3280" "RCR12766" "" 0 "" "" "HMR_3280;FAOXC162C142m;MAR05191" +"MAR03281" "" "FAOXC163GC142m;FAOXC162C142m" "RE1522M" "" "" "RE1522M;FAOXC163GC142m;HMR_3422;FAOXC162C142m" "" "HMR_3281;HMR_3422" "RCR12767;RCR12667" "" 0 "" "" "HMR_3281;FAOXC163GC142m;HMR_3422;MAR03422;MAR05208;FAOXC162C142m;MAR05191" +"MAR03282" "" "FAOXC163GC142m;FAOXC162C142m" "RE1525M" "" "" "RE1525M;FAOXC163GC142m;HMR_3422;FAOXC162C142m" "" "HMR_3282;HMR_3422" "RCR12768;RCR12667" "" 0 "" "" "HMR_3282;FAOXC163GC142m;HMR_3422;MAR03422;MAR05208;FAOXC162C142m;MAR05191" +"MAR03283" "" "FAOXC163GC142m;FAOXC162C142m" "RE1532M" "" "" "RE1532M;FAOXC163GC142m;HMR_3422;FAOXC162C142m" "" "HMR_3283;HMR_3422" "RCR12769;RCR12667" "" 0 "" "" "HMR_3283;FAOXC163GC142m;HMR_3422;MAR03422;MAR05208;FAOXC162C142m;MAR05191" +"MAR03284" "" "FAOXC142C122m" "RE1518M" "" "" "RE1518M;FAOXC142C122m;HMR_3422" "" "HMR_3284;HMR_3422" "RCR12770;RCR12667" "" 0 "" "" "HMR_3284;FAOXC142C122m;HMR_3422;MAR03422;MAR05123" +"MAR03285" "" "FAOXC142C122m" "" "" "" "RE1521M;FAOXC142C122m;HMR_3422" "" "HMR_3285;HMR_3422" "RCR12771;RCR12667" "" 0 "" "" "HMR_3285;FAOXC142C122m;HMR_3422;MAR03422;MAR05123" +"MAR03286" "" "FAOXC142C122m" "" "" "" "RE1526M;FAOXC142C122m;HMR_3422" "" "HMR_3286;HMR_3422" "RCR12772;RCR12667" "" 0 "" "" "HMR_3286;FAOXC142C122m;HMR_3422;MAR03422;MAR05123" +"MAR03287" "" "FAOXC142C122m" "" "" "" "RE1533M;FAOXC142C122m;HMR_3422" "" "HMR_3287;HMR_3422" "RCR12773;RCR12667" "" 0 "" "" "HMR_3287;FAOXC142C122m;HMR_3422;MAR03422;MAR05123" +"MAR03288" "R04756" "FAOXC122m" "RE1573M" "" "R-HSA-109338" "HMR_3288;RE1573M;FAOXC122m;HMR_3422" "MNXR109096" "HMR_3288;HMR_3422" "RCR12774;RCR12667" "" 0 "" "" "HMR_3288;FAOXC122m;HMR_3422;MAR03422;MAR05075" +"MAR03290" "" "FAOXC122C101m" "RE1520M" "" "R-HSA-109342" "RE1520M;FAOXC122C101m;HMR_3422" "MNXR125225" "HMR_3290;HMR_3422" "RCR12775;RCR12667" "" 0 "" "" "HMR_3290;HMR_3422;MAR03422;MAR05072" +"MAR03292" "" "FAOXC122C101m" "RE1527M" "" "" "RE1527M;FAOXC122C101m;HMR_3422" "" "HMR_3292;HMR_3422" "RCR12776;RCR12667" "" 0 "" "" "HMR_3292;HMR_3422;MAR03422;MAR05072" +"MAR03293" "" "FAOXC122C101m" "RE1534M" "" "" "RE1534M;FAOXC122C101m;HMR_3422" "" "HMR_3293;HMR_3422" "RCR12777;RCR12667" "" 0 "" "" "HMR_3293;FAOXC122C101m;HMR_3422;MAR03422;MAR05072" "MAR03294" "" "" "RE1519M" "" "" "FAOXC101C102m;HMR_3422" "" "HMR_3294;HMR_3422" "RCR12778;RCR12667" "" 0 "" "" "HMR_3294;HMR_3422;MAR03422" "MAR03298" "" "" "RE3628M" "" "R-HSA-109998" "RE3628M;FAOXC101m;HMR_3422" "MNXR118942" "HMR_3298;HMR_3422" "RCR12780;RCR12667" "" 0 "RHEA:45753" "RHEA:45752" "HMR_3298;HMR_3422;MAR03422" "MAR01174" "" "" "RE3383M" "" "" "RE3383M" "" "HMR_1174" "RCR12781" "" 0 "" "" "HMR_1174" @@ -9231,8 +9231,6 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR05030" "" "FAOXC11C9m" "" "" "" "FAOXC11C9m" "" "" "" "" 0 "" "" "FAOXC11C9m" "MAR05044" "" "FAOXC121C101m" "" "" "" "FAOXC121C101m" "" "" "" "" 0 "" "" "FAOXC121C101m" "MAR05069" "" "FAOXC121C10x" "" "" "" "FAOXC121C10x" "" "" "" "" 0 "" "" "FAOXC121C10x" -"MAR05072" "" "FAOXC122C101m" "" "" "" "FAOXC122C101m;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC122C101m;HMR_3422;MAR03422" -"MAR05075" "" "FAOXC122m" "" "" "" "FAOXC122m;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC122m;HMR_3422;MAR03422" "MAR05081" "" "FAOXC122x" "" "" "" "FAOXC122x" "" "" "" "" 0 "" "" "FAOXC122x" "MAR05083" "" "FAOXC123C102m;HMR_3426" "" "" "" "FAOXC123C102;HMR_3426m" "" "HMR_3426" "RCR12671" "" 0 "" "" "FAOXC123C102m;HMR_3426;MAR03426" "MAR05086" "" "FAOXC123C102x" "" "" "" "FAOXC123C102x" "" "" "" "" 0 "" "" "FAOXC123C102x" @@ -9250,7 +9248,6 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR05111" "" "FAOXC141C121m" "" "" "" "FAOXC141C121m" "" "" "" "" 0 "" "" "FAOXC141C121m" "MAR05119" "" "FAOXC141C121x" "" "" "" "FAOXC141C121x" "" "" "" "" 0 "" "" "FAOXC141C121x" "MAR05120" "" "FAOXC141C141OHm" "" "" "" "FAOXC141C141OHm" "" "" "" "" 0 "" "" "FAOXC141C141OHm" -"MAR05123" "" "FAOXC142C122m" "" "" "" "FAOXC142C122m;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC142C122m;HMR_3422;MAR03422" "MAR05175" "" "FAOXC142C122x" "" "" "" "FAOXC142C122x" "" "" "" "" 0 "" "" "FAOXC142C122x" "MAR05176" "" "FAOXC142C142OHm" "" "" "" "FAOXC142C142OHm" "" "" "" "" 0 "" "" "FAOXC142C142OHm" "MAR05177" "" "FAOXC143C123m;HMR_3426" "" "" "" "FAOXC143C123m;HMR_3426" "" "HMR_3426" "RCR12671" "" 0 "" "" "FAOXC143C123m;HMR_3426;MAR03426" @@ -9265,21 +9262,16 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR05188" "" "FAOXC161C141m" "" "" "" "FAOXC161C141m" "" "" "" "" 0 "" "" "FAOXC161C141m" "MAR05189" "" "FAOXC161C141x" "" "" "" "FAOXC161C141x" "" "" "" "" 0 "" "" "FAOXC161C141x" "MAR05190" "" "FAOXC161C161OHm" "" "" "" "FAOXC161C161OHm" "" "" "" "" 0 "" "" "FAOXC161C161OHm" -"MAR05191" "" "FAOXC162C142m" "" "" "" "FAOXC162C142m" "" "" "" "" 0 "" "" "FAOXC162C142m" "MAR05192" "" "FAOXC162C162OHm" "" "" "" "FAOXC162C162OHm" "" "" "" "" 0 "" "" "FAOXC162C162OHm" "MAR05193" "" "FAOXC163C142x" "" "" "" "FAOXC163C142x" "" "" "" "" 0 "" "" "FAOXC163C142x" "MAR05194" "" "FAOXC163C143m;HMR_3426" "" "" "" "FAOXC163C143m;HMR_3426" "" "HMR_3426" "RCR12671" "" 0 "" "" "FAOXC163C143m;HMR_3426;MAR03426" -"MAR05195" "" "FAOXC163C164Gm" "" "" "" "FAOXC163C164Gm;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC163C164Gm;HMR_3422;MAR03422" "MAR05196" "" "FAOXC163C164x" "" "" "" "FAOXC163C164x" "" "" "" "" 0 "" "" "FAOXC163C164x" -"MAR05208" "" "FAOXC163GC142m" "" "" "" "FAOXC163GC142m;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC163GC142m;HMR_3422;MAR03422" -"MAR05229" "" "FAOXC163Gm" "" "" "" "FAOXC163Gm;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC163Gm;HMR_3422;MAR03422" "MAR05235" "" "FAOXC163x" "" "" "" "FAOXC163x" "" "" "" "" 0 "" "" "FAOXC163x" "MAR05242" "" "FAOXC164C143m" "" "" "" "FAOXC164C143m" "" "" "" "" 0 "" "" "FAOXC164C143m" "MAR05256" "" "FAOXC164C143x" "" "" "" "FAOXC164C143x" "" "" "" "" 0 "" "" "FAOXC164C143x" "MAR05293" "" "FAOXC164C163x" "" "" "" "FAOXC164C163x" "" "" "" "" 0 "" "" "FAOXC164C163x" "MAR05298" "" "FAOXC164C165m" "" "" "" "FAOXC164C165m" "" "" "" "" 0 "" "" "FAOXC164C165m" "MAR05300" "" "FAOXC164C165x" "" "" "" "FAOXC164C165x" "" "" "" "" 0 "" "" "FAOXC164C165x" -"MAR05302" "" "FAOXC164GC163m" "" "" "" "FAOXC164GC163m;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC164GC163m;HMR_3422;MAR03422" "MAR05306" "" "FAOXC164m" "" "" "" "FAOXC164m" "" "" "" "" 0 "" "" "FAOXC164m" "MAR05309" "" "FAOXC164x" "" "" "" "FAOXC164x" "" "" "" "" 0 "" "" "FAOXC164x" "MAR05312" "" "FAOXC165C164m" "" "" "" "FAOXC165C164m" "" "" "" "" 0 "" "" "FAOXC165C164m" @@ -9294,9 +9286,7 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR05345" "" "FAOXC181C161m" "" "" "" "FAOXC181C161m" "" "" "" "" 0 "" "" "FAOXC181C161m" "MAR05350" "" "FAOXC181C161x" "" "" "" "FAOXC181C161x" "" "" "" "" 0 "" "" "FAOXC181C161x" "MAR05355" "" "FAOXC181C181OHm" "" "" "" "FAOXC181C181OHm" "" "" "" "" 0 "" "" "FAOXC181C181OHm" -"MAR05356" "" "FAOXC182C162m" "" "" "" "FAOXC182C162m" "" "" "" "" 0 "" "" "FAOXC182C162m" "MAR05357" "" "FAOXC182C182OHm" "" "" "" "FAOXC182C182OHm" "" "" "" "" 0 "" "" "FAOXC182C182OHm" -"MAR05358" "" "FAOXC183C163Gm" "" "" "" "FAOXC183C163Gm" "" "" "" "" 0 "" "" "FAOXC183C163Gm" "MAR05359" "" "FAOXC183C163m;HMR_3426" "" "" "" "FAOXC183C163m;HMR_3426" "" "HMR_3426" "RCR12671" "" 0 "" "" "FAOXC183C163m;HMR_3426;MAR03426" "MAR05360" "" "FAOXC184C163m" "" "" "" "FAOXC184C163m;HMR_3422" "" "HMR_3422" "RCR12667" "" 0 "" "" "FAOXC184C163m;HMR_3422;MAR03422" "MAR05364" "" "FAOXC184C163x" "" "" "" "FAOXC184C163x" "" "" "" "" 0 "" "" "FAOXC184C163x"