From 7bf6a63fd61c2762c5af07090dcfee0b027c91b5 Mon Sep 17 00:00:00 2001 From: Devlin-Moyer Date: Wed, 19 Jun 2024 20:09:25 -0400 Subject: [PATCH] feat: added new genes to YAML file and genes.tsv for all genes in new reactions not already present --- model/Human-GEM.yml | 42 ++++++++++++++++++++++++++++++++++++++++++ model/genes.tsv | 14 ++++++++++++++ 2 files changed, 56 insertions(+) diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index 97b6d6cc..f3148d9d 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -306164,6 +306164,9 @@ - !!omap - id: "ENSG00000100197" - name: "CYP2D6" + - !!omap + - id: "ENSG00000100209" + - name: "HSCB" - !!omap - id: "ENSG00000100243" - name: "CYB5R3" @@ -306689,6 +306692,9 @@ - !!omap - id: "ENSG00000105701" - name: "FKBP8" + - !!omap + - id: "ENSG00000105755" + - name: "ETHE1" - !!omap - id: "ENSG00000105835" - name: "NAMPT" @@ -306920,6 +306926,9 @@ - !!omap - id: "ENSG00000109452" - name: "INPP4B" + - !!omap + - id: "ENSG00000109519" + - name: "GRPEL1" - !!omap - id: "ENSG00000109576" - name: "AADAT" @@ -307208,6 +307217,9 @@ - !!omap - id: "ENSG00000112992" - name: "NNT" + - !!omap + - id: "ENSG00000113013" + - name: "HSPA9" - !!omap - id: "ENSG00000113073" - name: "SLC4A9" @@ -308618,6 +308630,9 @@ - !!omap - id: "ENSG00000135069" - name: "PSAT1" + - !!omap + - id: "ENSG00000135070" + - name: "ISCA1" - !!omap - id: "ENSG00000135093" - name: "USP30" @@ -308699,6 +308714,9 @@ - !!omap - id: "ENSG00000135940" - name: "COX5B" + - !!omap + - id: "ENSG00000136003" + - name: "ISCU" - !!omap - id: "ENSG00000136010" - name: "ALDH1L2" @@ -308840,9 +308858,15 @@ - !!omap - id: "ENSG00000137563" - name: "GGH" + - !!omap + - id: "ENSG00000137714" + - name: "FDX1" - !!omap - id: "ENSG00000137731" - name: "FXYD2" + - !!omap + - id: "ENSG00000137767" + - name: "SQOR" - !!omap - id: "ENSG00000137770" - name: "CTDSPL2" @@ -310904,6 +310928,9 @@ - !!omap - id: "ENSG00000165841" - name: "CYP2C19" + - !!omap + - id: "ENSG00000165898" + - name: "ISCA2" - !!omap - id: "ENSG00000165970" - name: "SLC6A5" @@ -311300,6 +311327,9 @@ - !!omap - id: "ENSG00000169432" - name: "SCN9A" + - !!omap + - id: "ENSG00000169599" + - name: "NFU1" - !!omap - id: "ENSG00000169660" - name: "HEXD" @@ -312143,6 +312173,9 @@ - !!omap - id: "ENSG00000181867" - name: "FTMT" + - !!omap + - id: "ENSG00000181873" + - name: "IBA57" - !!omap - id: "ENSG00000181915" - name: "ADO" @@ -312182,6 +312215,9 @@ - !!omap - id: "ENSG00000182415" - name: "CDY2A" + - !!omap + - id: "ENSG00000182512" + - name: "GLRX5" - !!omap - id: "ENSG00000182551" - name: "ADI1" @@ -313325,6 +313361,9 @@ - !!omap - id: "ENSG00000243989" - name: "ACY1" + - !!omap + - id: "ENSG00000244005" + - name: "NFS1" - !!omap - id: "ENSG00000244038" - name: "DDOST" @@ -313430,6 +313469,9 @@ - !!omap - id: "ENSG00000266200" - name: "PNLIPRP2" + - !!omap + - id: "ENSG00000267673" + - name: "FDX2" - !!omap - id: "ENSG00000267855" - name: "NDUFA7" diff --git a/model/genes.tsv b/model/genes.tsv index 03a06fe3..6ac21bb5 100644 --- a/model/genes.tsv +++ b/model/genes.tsv @@ -2886,3 +2886,17 @@ genes geneENSTID geneENSPID geneUniProtID geneSymbols geneEntrezID geneNames gen "ENSG00000196407" "ENST00000368817.10;ENST00000453881.2" "ENSP00000357807.4;ENSP00000406809.2" "Q8N1Q8" "THEM5" "284486" "thioesterase superfamily member 5" "ACOT15" "Inner mitochondria" "SwissProt" "ENSG00000013306" "ENST00000377095;ENST00000225308;ENST00000590194;ENST00000537904;ENST00000586016;ENST00000588049;ENST00000592857;ENST00000588767;ENST00000585523;ENST00000586633;ENST00000585636;ENST00000593166;ENST00000591006;ENST00000588315;ENST00000585695;ENST00000592372;ENST00000591151" "ENSP00000366299;ENSP00000225308;ENSP00000467681;ENSP00000444540;ENSP00000466676;ENSP00000465182;ENSP00000467956;ENSP00000466615;ENSP00000466144;ENSP00000465594;ENSP00000465554" "Q9BZJ4" "SLC25A39" "51629" "solute carrier family 25 member 39" "" "" "" "ENSG00000075303" "ENST00000341119;ENST00000429674;ENST00000444363;ENST00000446236;ENST00000470328;ENST00000483810;ENST00000491499;ENST00000496348" "ENSP00000344831;ENSP00000401473;ENSP00000405566;ENSP00000407780" "Q8TBP6" "SLC25A40" "55972" "solute carrier family 25 member 40" "MCFP" "" "" +"ENSG00000100209" "ENST00000216027.8;ENST00000398941.6" "ENSP00000216027.3;ENSP00000381914.2" "Q8IWL3" "HSCB" "150274" "HscB mitochondrial iron-sulfur cluster cochaperone" "" "" "" +"ENSG00000105755" "ENST00000292147.7;ENST00000600651.5" "ENSP00000292147.1;ENSP00000469037.1" "O95571" "ETHE1" "23474" "ETHE1 persulfide dioxygenase" "" "" "" +"ENSG00000109519" "ENST00000264954.5;ENST00000706689.1" "ENSP00000264954.4;ENSP00000516503.1" "Q9HAV7" "GRPEL1" "80273" "GrpE like 1, mitochondrial" "" "" "" +"ENSG00000113013" "ENST00000297185.9;ENST00000677066.1;ENST00000678300.1;ENST00000678384.1;ENST00000678051.1;ENST00000677425.1;ENST00000677064.1;ENST00000507115.6" "ENSP00000297185.3;ENSP00000502902.1;ENSP00000503259.1;ENSP00000503992.1;ENSP00000503219.1;ENSP00000503066.1;ENSP00000503373.1;ENSP00000423759.2" "P38646" "HSPA9" "3313" "heat shock protein family A (Hsp70) member 9" "" "" "" +"ENSG00000135070" "ENST00000375991.9;ENST00000326094.4;ENST00000311534.6;ENST00000637705.1" "Q9BUE6" "ISCA1" "81689" "iron-sulfur cluster assembly 1" "" "" "" +"ENSG00000136003" "ENST00000311893.14;ENST00000535729.5;ENST00000539593.1;ENST00000392807.8;ENST00000431221.6;ENST00000547005.5" "ENSP00000310623.9;ENSP00000445598.1;ENSP00000443272.1;ENSP00000376554.4;ENSP00000411108.2;ENSP00000446606.1" "Q9H1K1" "ISCU" "23479" "iron-sulfur cluster assembly enzyme" "" "" "" +"ENSG00000137714" "ENST00000260270.3" "ENSP00000260270.2" "P10109" "FDX1" "2230" "ferredoxin 1" +"ENSG00000137767" "ENST00000260324.12;ENST00000568606.5;ENST00000566934.1;ENST00000561735.5;ENST00000561493.5;ENST00000563296.1;ENST00000565997.1;ENST00000565227.1" "ENSP00000260324.7;ENSP00000456019.1;ENSP00000454520.1;ENSP00000456075.1;ENSP00000457937.1;ENSP00000456979.1;ENSP00000454953.1;ENSP00000457592.1" "Q9Y6N5" "SQOR" "58472" "sulfide quinone oxidoreductase" "" "" "" +"ENSG00000165898" "ENST00000556816.6;ENST00000298818.12;ENST00000554924.1" "ENSP00000452007.1;ENSP00000298818.8;ENSP00000450523.1" "Q86U28" "ISCA2" "122961" "iron-sulfur cluster assembly 2" "" "" "" +"ENSG00000169599" "ENST00000410022.7;ENST00000394305.5;ENST00000303698.7;ENST00000484177.5;ENST00000450796.6;ENST00000462320.5" "ENSP00000387219.3;ENSP00000377842.1;ENSP00000306965.3;ENSP00000417693.1;ENSP00000415102.2;ENSP00000418598.1" "Q9UMS0" "NFU1" "27247" "NFU1 iron-sulfur cluster scaffold" "" "" "" +"ENSG00000181873" "ENST00000366711.4" "ENSP00000355672.3" "Q5T440" "IBA57" "200205" "iron-sulfur cluster assembly factor IBA57" "" "" "" +"ENSG00000182512" "ENST00000331334.5;ENST00000557731.1" "ENSP00000328570.4;ENSP00000451800.1" "Q86SX6" "GLRX5" "51218" "glutaredoxin 5" "" "" "" +"ENSG00000244005" "ENST00000374092.9;ENST00000374085.5;ENST00000397425.5;ENST00000541387.5;ENST00000306750.3;ENST00000419569.5" "ENSP00000363205.3;ENSP00000363198.1;ENSP00000380570.1;ENSP00000440897.1;ENSP00000304740.3;ENSP00000393482.1" "Q9Y697" "NFS1" "9054" "NFS1 cysteine desulfurase" "" "" "" +"ENSG00000267673" "ENST00000393708.3;ENST00000492239.5;ENST00000494368.5;ENST00000706663.1" "ENSP00000377311.5;ENSP00000488228.1;ENSP00000467188.1;ENSP00000516489.1" "Q6P4F2" "FDX2" "112812" "ferredoxin 2" "" "" ""