Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error converting GenBank files with spaces in feature types #607

Open
cjmyers opened this issue Dec 9, 2019 · 0 comments
Open

Error converting GenBank files with spaces in feature types #607

cjmyers opened this issue Dec 9, 2019 · 0 comments
Assignees
Milestone

Comments

@cjmyers
Copy link
Contributor

cjmyers commented Dec 9, 2019

The following exception on the attached file below occurs when converting a GenBank file with spaces in the feature type field.

Error: java.lang.NumberFormatException: For input string: "sequence"
at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.lang.Integer.parseInt(Integer.java:580)
at java.lang.Integer.parseInt(Integer.java:615)
at org.sbolstandard.core2.GenBank.read(GenBank.java:1457)
at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:700)
at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:625)
at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:512)
at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:437)
at org.sbolstandard.core2.SBOLReader.read(SBOLReader.java:422)
at org.sbolstandard.core2.SBOLValidate.validate(SBOLValidate.java:2725)
at org.sbolstandard.core2.SBOLValidate.validate(SBOLValidate.java:2656)

laci.zip

@cjmyers cjmyers self-assigned this Dec 9, 2019
@cjmyers cjmyers added this to the SBOL 2.5 milestone Dec 9, 2019
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant