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pysbol: Segmentation fault after PartShop pull on Linux #203

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tim-tx opened this issue Aug 1, 2018 · 0 comments
Open

pysbol: Segmentation fault after PartShop pull on Linux #203

tim-tx opened this issue Aug 1, 2018 · 0 comments

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@tim-tx
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tim-tx commented Aug 1, 2018

Steps to reproduce:

  1. Run the following snippet (the parts.xml referenced below is here):

    from sbol import *
    
    namespace = "http://my_namespace.org"
    setHomespace(namespace)
    doc = Document()
    generic_parts = Document('parts.xml')
    generic_parts.copy("http://examples.org", doc)
    partshop = PartShop('https://synbiohub.org/public/igem')
    records = partshop.search('interlab')
    medium_device_uri = records[0].identity
    
  2. Run the following line

    partshop.pull(medium_device_uri, doc)
    

Result:

[1]    6109 segmentation fault (core dumped)  ipython

Tested on python 3.6 on Arch Linux, in ipython and regular python shell.

@tim-tx tim-tx changed the title Segmentation fault after PartShop pull on Linux pysbol: Segmentation fault after PartShop pull on Linux Aug 1, 2018
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