deliverable-wp1.md

layout	title	permalink
page	Metadata Standards	/deliverable-wp1/

Metadata Standards

The Metadata Standards work package contains the following tasks and components.

{% assign org_items = site.data.deliverables-wp.wp1 | where: "table", "org" %} {% if org_items.size > 0 %}

Organisational tasks

ID

Description

Status

{% for item in org_items %}

{{ item.id }}

{{ item.description }}

{{ item.status }}

{% endfor %}

{% endif %}

{% assign tec_items = site.data.deliverables-wp.wp1 | where: "table", "tec" %} {% if tec_items.size > 0 %}

Technical tasks

ID

Description

Status

{% for item in tec_items %}

{{ item.id }}

{{ item.description }}

{{ item.status }}

{% endfor %}

{% endif %}

Tasks

Metadata-Standards-1: Community consensus and commitment to data collection standards

Established the Open Standards Community for EM Workshop 22-23 Feb 2024 with participants from facilities, software, and repositories Draft schema available for EM metadata. The goal is to include metadata required for future processing and deposition. Schema terms are defined by existing ontologies where available: CryoEM ontology, PDBx/mmCIF dictionary, Helmholz EM Glossary, NeXus-FAIRmat NXem format Conversion tools under development for major instrument manufacturers and formats Coordinate with PREMISE project regarding terms and ontologies

Metadata-Standards-2: Ensure streamlined and automatic metadata harvesting at all ETH sites

Metadata extraction tools for life sciences (LS-Metadata Reader) and material science (Metadata-Extractor)

Metadata-Standards-3: SciCat Dataset Ingestor

• SciCat CLI
• Web-based front-end planned
• Fast data transfer using Globus