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agridat notes |
- change theobald.covariate from JAGS to brms?
- brms examples for crowder.seeds
- Figure out best way to use jags
- JAGS code for edwards.oats
- JAGS code for lee.potatoblight
- JAGS code for theobald.barley
- JAGS code for besag.elbatan
- Note: R_MAX_NUM_DLLS=150
- Rcmd check --run-dontrun before release devtools::run_examples(run=FALSE, start="butron.maize") build_site(lazy=TRUE, run=TRUE)
Do NOT use Roxygen to document data, because it will complain about data/*.txt files with error messages like: Error: 'uscrime' is not an exported object from 'namespace:agridat'
This document lists notes about data sources searched and additional sources of agricultural data. Although this is an .md file, the formatting is best viewed in plain text mode.
Henry Wallace archive at Univ Iowa Library http://www.lib.uiowa.edu/sc/location-and-hours/ Henry Wallace research papers http://aspace.lib.uiowa.edu/repositories/2/archival_objects/400608 500 Ear experiment. Might be the data for "What is in the corn judge's mind" paper http://aspace.lib.uiowa.edu/repositories/2/archival_objects/400615
- Plant-level data for distinctness, uniformity and stability testing. Most published data is for plot-means. This page mentions an R version for DUS: http://www.bioss.ac.uk/knowledge/software.html
- Yield-monitor data for a split-planter field
- Yield-monitor data for a strip trial.
Jose Crossa papers http://repository.cimmyt.org/xmlui/handle/10883/1/browse?value=Crossa,%20J.&type=author Meta-r http://repository.cimmyt.org/xmlui/handle/10883/4130 Data http://repository.cimmyt.org/xmlui/handle/10883/4036 http://repository.cimmyt.org/xmlui/handle/10883/2976 http://repository.cimmyt.org/xmlui/handle/10883/1380 http://repository.cimmyt.org/xmlui/handle/10883/4128 http://repository.cimmyt.org/xmlui/handle/10883/4290
Review of meta-analyses in agronomy http://www6.versailles-grignon.inra.fr/agronomie/Meta-analysis-in-agronomy/References
Biplot/StdErr/ VanEeuwijk 1993 - Incorporating env info Biplot Bartkowiak GxE table GE folder: Crossa 1997
F2 data. Folder: GE http://www.frontiersin.org/Plant_Physiology/10.3389/fphys.2013.00044/abstract CC license:
Comparison Between Linear and Non-parametric Regression Models for Genome-Enabled Prediction in Wheat https://www.scienceopen.com/document/vid/4017fb51-381c-4374-93aa-608423df4004;jsessionid=0TLjjSbaooSUk1y3JKd4nUeb.master:so-app1-prd Data: http://www.g3journal.org/content/suppl/2012/12/05/2.12.1595.DC1 All content has CC license
https://plant-breeding-genomics.extension.org/plant-breeding-and-genomics-learning-lessons
https://plant-breeding-genomics.extension.org/genomic-relationships-and-gblup <--- review this
https://plant-breeding-genomics.extension.org/rrblup-package-in-r-for-genomewide-selection/
Skimmed Vol 1
Vol 1-13
http://www.jstor.org/action/showPublication?journalCode=biometrics
http://archive.org Vol 3-5, 23-24 26
http://www.sciencedirect.com/science/journal/03784290/157 Vol 1-40
http://www.iasri.res.in/NewsLetters/nl.HTM
Vol 1. 309x
Vol 2. 53 694
Vol 3. 544 5 varieties, 2 blocks, 4 reps/block
Vol 4.
Vol 5. 579. Multi-year uniformity trial. agridat::bose.multi.uniformity
Vol 6. Pg 85 has 4-way factorial with whole-plot date, but non-contiguous sub-plots.
Vol 9.
Vol 10.
Vol 11.
Vol 12. 240. Wheat uniformity trial. agridat::iyer.wheat.uniformity
Vol 14. 315
Vol 16.
Vol 17.
Vol 19.
Vol 6.
Vol 23.
http://www.isas.org.in/jsp/onlinejournal.jsp Skimmed: Vol 50-56
http://www.jstor.org/action/showPublication?journalCode=jroyastatsocise4 Datasets 1998-2015 http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1467-9868/homepage/seriesb_datasets.htm http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291467-985X/homepage/datasets_all_series.htm
http://onlinelibrary.wiley.com/journal/10.1111/%28ISSN%291467-985X/homepage/datasets_all_series.htm 1998-2015
http://dca.au.dk/publikationer/historiske/planteavl/
Vol 19-24, 1906-1911 https://books.google.com/books?id=HBlJAAAAMAAJ Vol 25, 1912 https://books.google.com/books?id=M-5BAQAAMAAJ
Helen Elizabeth Conners (1951). Field plot techniques for sweet potatoes obtained from uniformity trial data. Master's Thesis. No data given.
Robert LeRoy Plaisted (1954). Field plot techniques for estimating onion yields. Master's Thesis. No data given.
Michael Holle. 1960. Plot technique for field evaluation of three characters in the lima bean. Master's Thesis. No data given.
Howard Lewis Taylor (1951). The effect of plot shape on experimental error. Master's Thesis. No data given. Used data from a corn uniformity trial, oats uniformity, and the data of Fairfield Smith. Smaller experimental errors were found for long narrow plots.
Ecol 563 Stat Meth in Ecology http://www.unc.edu/courses/2010fall/ecol/563/001/ Env Studies 562 Stat for Envt Science http://www.unc.edu/courses/2010spring/ecol/562/001/ Ecol 145 http://www.unc.edu/courses/2006spring/ecol/145/001/docs/lectures.htm
http://newprairiepress.org/agstatconference/ 1989-2014
http://www.sciencedirect.com/science/journal/01681699/103 Vol 1-110 180-191
https://www.cambridge.org/core/journals/journal-of-agricultural-science/all-issues 1900-2016
https://www.cambridge.org/core/journals/experimental-agriculture 1965-2016
http://support.sas.com/events/sasglobalforum/previous/online.html 22-31, 2007-2013