diff --git a/.github/workflows/build_and_upload_conda.yaml b/.github/workflows/build_and_upload_conda.yaml index 50519bf..4baaca4 100644 --- a/.github/workflows/build_and_upload_conda.yaml +++ b/.github/workflows/build_and_upload_conda.yaml @@ -26,6 +26,11 @@ jobs: auto-update-conda: false auto-activate-base: false show-channel-urls: true + - name: Add conda channels + run: | + conda config --append channels statphysbio + conda config --append channels conda-forge + conda config --append channels bioconda - name: Build and upload the conda packages uses: uibcdf/action-build-and-upload-conda-packages@v1.3.0 with: diff --git a/README.md b/README.md index c030f36..59357f4 100644 --- a/README.md +++ b/README.md @@ -2,11 +2,11 @@ ## Installation ``` -conda install zernikegrams -c statphysbio -c conda-forge +conda install zernikegrams -c statphysbio -c conda-forge -c bioconda ``` This installs zernikegrams (our package) and its dependencies in an existing conda environment. Common issues: -- *dssp requires libzlib >=1.3.1 but everything else requires libzlib <1.3* Fix: make sure to install with -c statphysbio before -c bioconda. statphysbio specifically builds a version of dssp for this reason! (But bio conda ) +- *dssp requires libzlib >=1.3.1 but everything else requires libzlib <1.3* Fix: make sure to install with -c statphysbio before -c bioconda. statphysbio specifically builds a version of dssp for this reason! (But bio conda is still necessary for `reduce`) ### Requirements Zernikegrams is distributed through the anaconda package manager, which provides most dependencies in most cases. Notable exceptions include: