diff --git a/README.md b/README.md index 5fcb51d..6c57a1a 100644 --- a/README.md +++ b/README.md @@ -66,19 +66,6 @@ bin/C2C spine -i

-## Slice-by-Slice 2D Analysis of Muscle and Adipose Tissue - -### Usage -```bash -bin/C2C muscle_adipose_tissue -i -``` -- DICOM files within the input_path folder and subfolders of input_path will be processed. - -### Example Output Image -

- -

- ## End-to-End Spine, Muscle, and Adipose Tissue Analysis at T12-L5 ### Usage @@ -182,6 +169,19 @@ bin/C2C all -i ``` - input_path should contain a DICOM series or subfolders that contain DICOM series. +## Slice-by-Slice 2D Analysis of Muscle and Adipose Tissue [Depricated] + +### Usage +```bash +bin/C2C muscle_adipose_tissue -i +``` +- DICOM files within the input_path folder and subfolders of input_path will be processed. + +### Example Output Image +

+ +

+ ## Contribute If you would like to contribute to Comp2Comp, we recommend you clone the repository and install Comp2Comp with `pip` in editable mode. diff --git a/comp2comp/io/io_utils.py b/comp2comp/io/io_utils.py index 61aadce..885b658 100644 --- a/comp2comp/io/io_utils.py +++ b/comp2comp/io/io_utils.py @@ -4,7 +4,6 @@ import os - def find_dicom_files(input_path): dicom_series = [] if not os.path.isdir(input_path):