You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Resampling...
Resampled in 5.60s
Predicting part 1 of 1 ...
100%|███████████████████████████████████████████████████████████████████████████████████| 27/27 [00:11<00:00, 2.45it/s]
Predicted in 90.40s
Resampling...
Finished SpineSegmentation with output keys dict_keys([])
Running ToCanonical with input keys odict_keys(['inference_pipeline'])
Finished ToCanonical with output keys dict_keys([])
Running SpineComputeROIs with input keys odict_keys(['inference_pipeline'])
RuntimeWarning: invalid value encountered in divide
normalized_sums = sums / np.sum(sums)
WARNING:root:Label L5 not found in segmentation volume.
WARNING:root:Label L4 not found in segmentation volume.
WARNING:root:Label L3 not found in segmentation volume.
Computing ROI with centroid 255.000, 198.800, 17.864 and pixel spacing 0.709mm, 0.709mm, 0.625mm...
Elapsed time for erosion operation: 1.412116527557373 seconds
Elapsed time for full ROI computation: 1.7626237869262695 seconds
Computing ROI with centroid 257.000, 196.715, 64.390 and pixel spacing 0.709mm, 0.709mm, 0.625mm...
Killed I have gpu machine in system torch.gpu.is_available() return true
How to handle this situation i need some help here
The text was updated successfully, but these errors were encountered:
Processing: dir with 529 slices
Inference pipeline:
(1) InferencePipeline
(2) SpineFindDicoms
(3) InferencePipeline
(4) SpineMuscleAdiposeTissueReport
Starting inference pipeline for:
Running InferencePipeline with input keys odict_keys(['inference_pipeline', 'kwargs'])
Inference pipeline:
(1) DicomToNifti
(2) SpineSegmentation
(3) ToCanonical
(4) SpineComputeROIs
(5) SpineMetricsSaver
(6) SpineCoronalSagittalVisualizer
(7) SpineReport
Starting inference pipeline for:
Running DicomToNifti with input keys odict_keys(['inference_pipeline'])
Finished DicomToNifti with output keys dict_keys([])
Running SpineSegmentation with input keys odict_keys(['inference_pipeline'])
If you use this tool please cite: https://pubs.rsna.org/doi/10.1148/ryai.230024
Resampling...
Resampled in 5.60s
Predicting part 1 of 1 ...
100%|███████████████████████████████████████████████████████████████████████████████████| 27/27 [00:11<00:00, 2.45it/s]
Predicted in 90.40s
Resampling...
Finished SpineSegmentation with output keys dict_keys([])
Running ToCanonical with input keys odict_keys(['inference_pipeline'])
Finished ToCanonical with output keys dict_keys([])
Running SpineComputeROIs with input keys odict_keys(['inference_pipeline'])
RuntimeWarning: invalid value encountered in divide
normalized_sums = sums / np.sum(sums)
WARNING:root:Label L5 not found in segmentation volume.
WARNING:root:Label L4 not found in segmentation volume.
WARNING:root:Label L3 not found in segmentation volume.
Computing ROI with centroid 255.000, 198.800, 17.864 and pixel spacing 0.709mm, 0.709mm, 0.625mm...
Elapsed time for erosion operation: 1.412116527557373 seconds
Elapsed time for full ROI computation: 1.7626237869262695 seconds
Computing ROI with centroid 257.000, 196.715, 64.390 and pixel spacing 0.709mm, 0.709mm, 0.625mm...
Killed I have gpu machine in system torch.gpu.is_available() return true
How to handle this situation i need some help here
The text was updated successfully, but these errors were encountered: