From 2753b49c4e4bfd76a5ac6971e52b3604e5ea4617 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 9 Oct 2023 17:40:54 +0000
Subject: [PATCH 1/3] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.4.0...v4.5.0)
---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 07601cd208..7153a7dfc0 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v4.5.0
     hooks:
     -   id: check-yaml
     -   id: end-of-file-fixer

From 8e0575838b6177a134d7f89c95f499465975978d Mon Sep 17 00:00:00 2001
From: Samuel Garcia <sam.garcia.die@gmail.com>
Date: Tue, 10 Oct 2023 08:11:15 +0200
Subject: [PATCH 2/3] fix plot_spike_on_trace

---
 src/spikeinterface/widgets/spikes_on_traces.py | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/src/spikeinterface/widgets/spikes_on_traces.py b/src/spikeinterface/widgets/spikes_on_traces.py
index c2bed8fe41..b68efc3f8a 100644
--- a/src/spikeinterface/widgets/spikes_on_traces.py
+++ b/src/spikeinterface/widgets/spikes_on_traces.py
@@ -162,10 +162,6 @@ def plot_matplotlib(self, data_plot, **backend_kwargs):
         max_y = np.max(traces_widget.data_plot["channel_locations"][:, 1])
 
         n = len(traces_widget.data_plot["channel_ids"])
-        order = traces_widget.data_plot["order"]
-
-        if order is None:
-            order = np.arange(n)
 
         if ax.get_legend() is not None:
             ax.get_legend().remove()
@@ -221,7 +217,7 @@ def plot_matplotlib(self, data_plot, **backend_kwargs):
                     # discontinuity
                     times[:, -1] = np.nan
                     times_r = times.reshape(times.shape[0] * times.shape[1])
-                    waveforms = traces[waveform_idxs]  # [:, :, order]
+                    waveforms = traces[waveform_idxs]
                     waveforms_r = waveforms.reshape((waveforms.shape[0] * waveforms.shape[1], waveforms.shape[2]))
 
                     for i, chan_id in enumerate(traces_widget.data_plot["channel_ids"]):

From d2ba3fa5200dbb042ddc8471256a5979642eb7b3 Mon Sep 17 00:00:00 2001
From: Alessio Buccino <alejoe9187@gmail.com>
Date: Thu, 12 Oct 2023 09:32:41 -0400
Subject: [PATCH 3/3] Attempt to fix failing CI

---
 .github/actions/build-test-environment/action.yml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/.github/actions/build-test-environment/action.yml b/.github/actions/build-test-environment/action.yml
index 004fe31203..7241f60a8b 100644
--- a/.github/actions/build-test-environment/action.yml
+++ b/.github/actions/build-test-environment/action.yml
@@ -37,6 +37,11 @@ runs:
     - name: git-annex install
       run: |
         wget https://downloads.kitenet.net/git-annex/linux/current/git-annex-standalone-amd64.tar.gz
+        mkdir /home/runner/work/installation
+        mv git-annex-standalone-amd64.tar.gz /home/runner/work/installation/
+        workdir=$(pwd)
+        cd /home/runner/work/installation
         tar xvzf git-annex-standalone-amd64.tar.gz
         echo "$(pwd)/git-annex.linux" >> $GITHUB_PATH
+        cd $workdir
       shell: bash