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trombinoscope/publication/pierre-larmande.bib

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+@article{droc_orygenesdb_2009,
+	title = {{OryGenesDB} 2008 update: database interoperability for functional genomics of rice},
+	volume = {37},
+	doi = {10.1093/nar/gkn821},
+	number = {Database},
+	journal = {Nucleic Acids Research},
+	author = {Droc, G. and Perin, C. and Fromentin, S. and Larmande, P.},
+	month = jan,
+	year = {2009},
+	pages = {D992--D995},
+}
+
+@article{larmande_oryza_2008,
+	title = {Oryza {Tag} {Line}, a phenotypic mutant database for the {Genoplante} rice insertion line library},
+	volume = {36},
+	doi = {10.1093/nar/gkm762},
+	number = {Database issue},
+	journal = {Nucleic Acids Res.},
+	author = {Larmande, Pierre and Gay, Céline and Lorieux, Mathias and Périn, Christophe and Bouniol, Matthieu and Droc, Gaëtan and Sallaud, Christophe and Perez, Pascual and Barnola, Isabelle and Biderre-Petit, Corinne and Martin, Jérôme and Morel, Jean Benoît and Johnson, Alexander A. T. and Bourgis, Fabienne and Ghesquière, Alain and Ruiz, Manuel and Courtois, Brigitte and Guiderdoni, Emmanuel},
+	month = jan,
+	year = {2008},
+	pages = {D1022--1027},
+}
+
+@article{droc_orygenesdb:_2006,
+	title = {{OryGenesDB}: a database for rice reverse genetics},
+	volume = {34},
+	doi = {10.1093/nar/gkj012},
+	number = {Database issue},
+	journal = {Nucleic Acids Res.},
+	author = {Droc, G. and Ruiz, M. and Larmande, P. and Pereira, A. and Piffanelli, P. and Morel, J. B. and Dievart, A. and Courtois, B. and Guiderdoni, E. and Périn, C.},
+	month = jan,
+	year = {2006},
+	pages = {D736--740},
+}
+
+@article{jonquet_agroportal:_2018,
+	title = {{AgroPortal}: {A} vocabulary and ontology repository for agronomy},
+	volume = {144},
+	doi = {10.1016/j.compag.2017.10.012},
+	journal = {Computers and Electronics in Agriculture},
+	author = {Jonquet, Clément and Toulet, Anne and Arnaud, Elizabeth and Aubin, Sophie and Dzalé Yeumo, Esther and Emonet, Vincent and Graybeal, John and Laporte, Marie-Angélique and Musen, Mark A. and Pesce, Valeria and Larmande, Pierre},
+	month = jan,
+	year = {2018},
+	pages = {126--143},
+}
+
+@article{sempere_gigwagenotype_2016,
+	title = {Gigwa—{Genotype} investigator for genome-wide analyses},
+	volume = {5},
+	doi = {10.1186/s13742-016-0131-8},
+	number = {1},
+	journal = {GigaScience},
+	author = {Sempéré, Guilhem and Philippe, Florian and Dereeper, Alexis and Ruiz, Manuel and Sarah, Gautier and Larmande, Pierre},
+	month = jun,
+	year = {2016},
+	pages = {25},
+}
+
+@article{abbeloos_brapi_2019,
+	title = {{BrAPI} - an {Application} {Programming} {Interface} for {Plant} {Breeding} {Applications}},
+	doi = {10.1093/bioinformatics/btz190},
+	author = {Abbeloos, Rafael and Vasques Costa, Bruno and Edwards, Jeremy D and Papoutsoglou, Evangelia and Finkers, Richard and Verouden, Maikel and Robbins, Kelly and Selby, Peter and Glaser, Philip and Sun, Qi and Gao, Star Yanxin and Laporte, Marie-Angélique and Rouard, Mathieu and Guignon, Valentin and Kilian, Andrzej and Pearce, Brian and Uszynski, Grzegorz and Hok, Puthick and Larmande, Pierre and LeBauer, David and Marshall, David and Stephen, Gordon and Milne, Iain and Shaw, Paul and Raubach, Sebastian and Mistry, Naymesh and Backlund, Jan Erik and Tovar, Clarysabel and Soldevilla, Nahuel and Neveu, Pascal and Ramirez-Gonzalez, Ricardo H and Rathore, Abhishek and Sarma, Chaitanya and Rife, Trevor and Simon, Reinhard and Basterrechea Salido, Martin and Lange, Matthias and Ghaffar, Mehmood and König, Patrick and Scholz, Uwe and Lyon, David and Bauchet, Guillaume and Morales, Nicolas and Mueller, Lukas and Perez-Masias, Ivan and Benites-Alfaro, Omar and Birkett, Clay and Matthews, Dave and Raque, Angel M and Lagare, Jack Elendil B and Calaminos, Viana C and Sempéré, Guilhem and Carceller, Pierre and Pommier, Cyril and Cornut, Guillaume},
+	month = mar,
+	year = {2019},
+}
+
+
+@article{grant_agbiodata_2018,
+	title = {{AgBioData} consortium recommendations for sustainable genomics and genetics databases for agriculture},
+	volume = {2018},
+	doi = {10.1093/database/bay088},
+	journal = {Database},
+	author = {Grant, David and Nelson, Rex and Cannon, Steve and Harper, Lisa and Andorf, Carson and Cannon, Ethalinda K S and Condon, Bradford and Staton, Margaret and Cooper, Laurel and Jaiswal, Pankaj and Naithani, Sushma and Unni, Deepak and Dunn, Nathan and Elsik, Christine G and Farmer, Andrew and Grau, Emily and Wegrzyn, Jill and Herndon, Nic and Park, Carissa and Reecy, James and Hu, Zhi-Liang and Jonquet, Clement and Larmande, Pierre and Lazo, Gerard and Sen, Taner Z and Campbell, Jacqueline and McCarthy, Fiona and Menda, Naama and Mungall, Christopher J and Munoz-Torres, Monica C and Nesdill, Daureen and Sanderson, Lacey-Anne and Wang, Liya and Tello-Ruiz, Marcela Karey and Williams, Jason and Woodhouse, Margaret and Main, Doreen and Yu, Jing and Humann, Jodi and Jung, Sook and Ficklin, Stephen P and Unda, Victor and Poelchau, Monica and Walls, Ramona and Arnaud, Elizabeth and Laporte, Marie-Angélique and Reiser, Leonore and Subramaniam, Sabarinath and Berardini, Tanya Z and Birkett, Clayton and Ware, Doreen and Carson, James},
+	month = sep,
+	year = {2018},
+	keywords = {cloud computing, market oriented computing, utility computing, virtualization, \#nosource},
+}
+
+
+@article{do_pyrice_2020,
+	title = {{PyRice}: a {Python} package for querying {Oryza} {Sativa} databases},
+	doi = {10.1093/bioinformatics/btaa694},
+	journal = {Bioinformatics},
+	author = {Do, Quan and Hai, Ho Bich and Larmande, Pierre},
+	year = {2020},
+}
+
+@article{guilhem_gigwa_2019,
+	title = {Gigwa v2 – {Extended} and improved genotype investigator},
+	volume = {8},
+	doi = {10.1093/gigascience/giz051},
+	number = {5},
+	journal = {GigaScience},
+	author = {Guilhem, Sempéré and Adrien, Pétel and Mathieu, Rouard and Julien, Frouin and Yann, Hueber and Fabien, De Bellis and Pierre, Larmande},
+	year = {2019},
+	pages = {giz051},
+}
+
+@article{juanillas_v_rice_2019,
+	title = {Rice {Galaxy}: an open resource for plant science},
+	volume = {8},
+	doi = {10.1101/358754},
+	number = {5},
+	journal = {Gigascience},
+	author = {{Juanillas V} and {Dereeper A} and {Beaume N} and {Droc G} and {Dizon J} and {Mendoza JR} and {Perdon JP} and {Mansueto L} and {Triplett L} and {Lang J} and {Zhou G} and {Ratharanjan K} and {Plale B} and {Haga J} and {Larmande P} and {Mauleon RP}},
+	month = may,
+	year = {2019},
+	pages = {giz028},
+}
+
+@article{wollbrett_clever_2013,
+	title = {Clever generation of rich {SPARQL} queries from annotated relational schema: application to {Semantic} {Web} {Service} creation for biological databases},
+	volume = {14},
+	doi = {10.1186/1471-2105-14-126},
+	number = {1},
+	journal = {BMC Bioinformatics},
+	author = {Wollbrett, Julien and Larmande, Pierre and Lamotte, Frédéric de and Ruiz, Manuel},
+	year = {2013},
+	pages = {126},
+}
+
+@article{larmande_oryzagp_2021,
+	title = {{OryzaGP} 2021 update: a rice gene and protein dataset for named-entity recognition},
+	volume = {19},
+	doi = {10.5808/gi.21015},
+	number = {3},
+	journal = {Genomics Inform},
+	author = {Larmande, Pierre and Liu, Yusha and Yao, Xinzhi and Xia, Jingbo},
+	month = sep,
+	year = {2021},
+	pages = {e27},
+}
+
+@article{venkatesan_agronomic_2018,
+	title = {Agronomic {Linked} {Data} ({AgroLD}): {A} knowledge-based system to enable integrative biology in agronomy},
+	volume = {13},
+	doi = {10.1371/journal.pone.0198270},
+	number = {11},
+	journal = {PLoS One},
+	author = {Venkatesan, Aravind and Tagny Ngompe, Gildas and Hassouni, Nordine El and Chentli, Imene and Guignon, Valentin and Jonquet, Clement and Ruiz, Manuel and Larmande, Pierre},
+	year = {2018},
+	pages = {e0198270},
+}