diff --git a/trombinoscope/publication/gaetan-droc.bib b/trombinoscope/publication/gaetan-droc.bib new file mode 100644 index 0000000..92a73b3 --- /dev/null +++ b/trombinoscope/publication/gaetan-droc.bib @@ -0,0 +1,95 @@ + @article{Wang_2022, title={Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes}, volume={12}, ISSN={2047-217X}, url={http://dx.doi.org/10.1093/gigascience/giad005}, DOI={10.1093/gigascience/giad005}, journal={GigaScience}, publisher={Oxford University Press (OUP)}, author={Wang, Zheng-Feng and Rouard, Mathieu and Droc, Gaetan and Heslop-Harrison, Pat (J S) and Ge, Xue-Jun}, year={2022}, month=dec } +, + @article{Wang_2022, title={A chromosome-level reference genome of Ensete glaucum gives insight into diversity and chromosomal and repetitive sequence evolution in the Musaceae}, volume={11}, ISSN={2047-217X}, url={http://dx.doi.org/10.1093/gigascience/giac027}, DOI={10.1093/gigascience/giac027}, journal={GigaScience}, publisher={Oxford University Press (OUP)}, author={Wang, Ziwei and Rouard, Mathieu and Biswas, Manosh Kumar and Droc, Gaetan and Cui, Dongli and Roux, Nicolas and Baurens, Franc-Christophe and Ge, Xue-Jun and Schwarzacher, Trude and Heslop-Harrison, Pat (J S) and Liu, Qing}, year={2022} } +, + @article{Piet_2022, title={A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly}, volume={3}, ISSN={2590-3462}, url={http://dx.doi.org/10.1016/j.xplc.2022.100330}, DOI={10.1016/j.xplc.2022.100330}, number={5}, journal={Plant Communications}, publisher={Elsevier BV}, author={Piet, Quentin and Droc, Gaetan and Marande, William and Sarah, Gautier and Bocs, Stéphanie and Klopp, Christophe and Bourge, Mickael and Siljak-Yakovlev, Sonja and Bouchez, Olivier and Lopez-Roques, Céline and Lepers-Andrzejewski, Sandra and Bourgois, Laurent and Zucca, Joseph and Dron, Michel and Besse, Pascale and Grisoni, Michel and Jourda, Cyril and Charron, Carine}, year={2022}, month=sep, pages={100330} } +, + @article{Summo_2022, title={GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics}, volume={2022}, ISSN={1758-0463}, url={http://dx.doi.org/10.1093/database/baac057}, DOI={10.1093/database/baac057}, journal={Database}, publisher={Oxford University Press (OUP)}, author={Summo, Marilyne and Comte, Aurore and Martin, Guillaume and Perelle, Pierrick and Weitz, Eric M and Droc, Gaëtan and Rouard, Mathieu}, year={2022}, month=jan } +, + @article{Agret_2022, title={RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes}, volume={7}, ISSN={2475-9066}, url={http://dx.doi.org/10.21105/joss.04363}, DOI={10.21105/joss.04363}, number={80}, journal={Journal of Open Source Software}, publisher={The Open Journal}, author={Agret, Clément and Chateau, Annie and Droc, Gaetan and Sarah, Gautier and Ruiz, Manuel and Mancheron, Alban}, year={2022}, month=dec, pages={4363} } +, + @article{Droc_2022, title={The banana genome hub: a community database for genomics in the Musaceae}, volume={9}, ISSN={2052-7276}, url={http://dx.doi.org/10.1093/hr/uhac221}, DOI={10.1093/hr/uhac221}, journal={Horticulture Research}, publisher={Oxford University Press (OUP)}, author={Droc, Gaëtan and Martin, Guillaume and Guignon, Valentin and Summo, Marilyne and Sempéré, Guilhem and Durant, Eloi and Soriano, Alexandre and Baurens, Franc-Christophe and Cenci, Alberto and Breton, Catherine and Shah, Trushar and Aury, Jean-Marc and Ge, Xue-Jun and Harrison, Pat Heslop and Yahiaoui, Nabila and D’Hont, Angélique and Rouard, Mathieu}, year={2022} } +, + @article{Gottin_2021, title={A new comprehensive annotation of leucine‐rich repeat‐containing receptors in rice}, volume={108}, ISSN={1365-313X}, url={http://dx.doi.org/10.1111/tpj.15456}, DOI={10.1111/tpj.15456}, number={2}, journal={The Plant Journal}, publisher={Wiley}, author={Gottin, Céline and Dievart, Anne and Summo, Marilyne and Droc, Gaëtan and Périn, Christophe and Ranwez, Vincent and Chantret, Nathalie}, year={2021}, month=sep, pages={492–508} } +, + @article{Quilb__2021, title={Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium–legume symbiosis}, volume={12}, ISSN={2041-1723}, url={http://dx.doi.org/10.1038/s41467-021-21094-7}, DOI={10.1038/s41467-021-21094-7}, number={1}, journal={Nature Communications}, publisher={Springer Science and Business Media LLC}, author={Quilbé, Johan and Lamy, Léo and Brottier, Laurent and Leleux, Philippe and Fardoux, Joël and Rivallan, Ronan and Benichou, Thomas and Guyonnet, Rémi and Becana, Manuel and Villar, Irene and Garsmeur, Olivier and Hufnagel, Bárbara and Delteil, Amandine and Gully, Djamel and Chaintreuil, Clémence and Pervent, Marjorie and Cartieaux, Fabienne and Bourge, Mickaël and Valentin, Nicolas and Martin, Guillaume and Fontaine, Loïc and Droc, Gaëtan and Dereeper, Alexis and Farmer, Andrew and Libourel, Cyril and Nouwen, Nico and Gressent, Frédéric and Mournet, Pierre and D’Hont, Angélique and Giraud, Eric and Klopp, Christophe and Arrighi, Jean-François}, year={2021}, month=feb } +, + @article{Guignon_2020, title={GreenPhylDB v5: a comparative pangenomic database for plant genomes}, volume={49}, ISSN={1362-4962}, url={http://dx.doi.org/10.1093/NAR/GKAA1068}, DOI={10.1093/nar/gkaa1068}, number={D1}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Guignon, Valentin and Toure, Abdel and Droc, Gaëtan and Dufayard, Jean-François and Conte, Matthieu and Rouard, Mathieu}, year={2020}, month=nov, pages={D1464–D1471} } +, + @article{Pompidor_2021, title={Three founding ancestral genomes involved in the origin of sugarcane}, volume={127}, ISSN={1095-8290}, url={http://dx.doi.org/10.1093/aob/mcab008}, DOI={10.1093/aob/mcab008}, number={6}, journal={Annals of Botany}, publisher={Oxford University Press (OUP)}, author={Pompidor, Nicolas and Charron, Carine and Hervouet, Catherine and Bocs, Stéphanie and Droc, Gaëtan and Rivallan, Ronan and Manez, Aurore and Mitros, Therese and Swaminathan, Kankshita and Glaszmann, Jean-Christophe and Garsmeur, Olivier and D’Hont, Angélique}, year={2021}, month=feb, pages={827–840} } +, + @article{Leclercq_2020, title={Post-transcriptional regulation of several biological processes involved in latex production in Hevea brasiliensis}, volume={8}, ISSN={2167-8359}, url={http://dx.doi.org/10.7717/peerj.8932}, DOI={10.7717/peerj.8932}, journal={PeerJ}, publisher={PeerJ}, author={Leclercq, Julie and Wu, Shuangyang and Farinas, Benoît and Pointet, Stéphanie and Favreau, Bénédicte and Vignes, Hélène and Kuswanhadi, Kuswanhadi and Ortega-Abboud, Enrique and Dufayard, Jean-François and Gao, Shenghan and Droc, Gaëtan and Hu, Songnian and Tang, Chaorong and Montoro, Pascal}, year={2020}, month=apr, pages={e8932} } +, + @article{Wu_2020, title={Structural and Functional Annotation of Transposable Elements Revealed a Potential Regulation of Genes Involved in Rubber Biosynthesis by TE-Derived siRNA Interference in Hevea brasiliensis}, volume={21}, ISSN={1422-0067}, url={http://dx.doi.org/10.3390/ijms21124220}, DOI={10.3390/ijms21124220}, number={12}, journal={International Journal of Molecular Sciences}, publisher={MDPI AG}, author={Wu, Shuangyang and Guyot, Romain and Bocs, Stéphanie and Droc, Gaëtan and Oktavia, Fetrina and Hu, Songnian and Tang, Chaorong and Montoro, Pascal and Leclercq, Julie}, year={2020}, month=jun, pages={4220} } +, + @article{Santos_2019, title={Fine Scale Genomic Signals of Admixture and Alien Introgression among Asian Rice Landraces}, volume={11}, ISSN={1759-6653}, url={http://dx.doi.org/10.1093/gbe/evz084}, DOI={10.1093/gbe/evz084}, number={5}, journal={Genome Biology and Evolution}, publisher={Oxford University Press (OUP)}, author={Santos, João D and Chebotarov, Dmytro and McNally, Kenneth L and Bartholomé, Jérôme and Droc, Gaëtan and Billot, Claire and Glaszmann, Jean Christophe}, editor={McLysaght, Aoife}, year={2019}, month=apr, pages={1358–1373} } +, + @article{Juanillas_2019, title={Rice Galaxy: an open resource for plant science}, volume={8}, ISSN={2047-217X}, url={http://dx.doi.org/10.1093/gigascience/giz028}, DOI={10.1093/gigascience/giz028}, number={5}, journal={GigaScience}, publisher={Oxford University Press (OUP)}, author={Juanillas, Venice and Dereeper, Alexis and Beaume, Nicolas and Droc, Gaetan and Dizon, Joshua and Mendoza, John Robert and Perdon, Jon Peter and Mansueto, Locedie and Triplett, Lindsay and Lang, Jillian and Zhou, Gabriel and Ratharanjan, Kunalan and Plale, Beth and Haga, Jason and Leach, Jan E and Ruiz, Manuel and Thomson, Michael and Alexandrov, Nickolai and Larmande, Pierre and Kretzschmar, Tobias and Mauleon, Ramil P}, year={2019}, month=may } +, + @article{Garsmeur_2018, title={A mosaic monoploid reference sequence for the highly complex genome of sugarcane}, volume={9}, ISSN={2041-1723}, url={http://dx.doi.org/10.1038/s41467-018-05051-5}, DOI={10.1038/s41467-018-05051-5}, number={1}, journal={Nature Communications}, publisher={Springer Science and Business Media LLC}, author={Garsmeur, Olivier and Droc, Gaetan and Antonise, Rudie and Grimwood, Jane and Potier, Bernard and Aitken, Karen and Jenkins, Jerry and Martin, Guillaume and Charron, Carine and Hervouet, Catherine and Costet, Laurent and Yahiaoui, Nabila and Healey, Adam and Sims, David and Cherukuri, Yesesri and Sreedasyam, Avinash and Kilian, Andrzej and Chan, Agnes and Van Sluys, Marie-Anne and Swaminathan, Kankshita and Town, Christopher and Bergès, Hélène and Simmons, Blake and Glaszmann, Jean Christophe and van der Vossen, Edwin and Henry, Robert and Schmutz, Jeremy and D’Hont, Angélique}, year={2018}, month=jul } +, + @article{Domonh_do_2018, title={Genomic structure, QTL mapping, and molecular markers of lipase genes responsible for palm oil acidity in the oil palm (Elaeis guineensis Jacq.)}, volume={14}, ISSN={1614-2950}, url={http://dx.doi.org/10.1007/s11295-018-1284-7}, DOI={10.1007/s11295-018-1284-7}, number={5}, journal={Tree Genetics & Genomes}, publisher={Springer Science and Business Media LLC}, author={Domonhédo, Hubert and Cuéllar, Teresa and Espeout, Sandra and Droc, Gaëtan and Summo, Marilyne and Rivallan, Ronan and Cros, David and Nouy, Bruno and Omoré, Alphonse and Nodichao, Léifi and Arondel, Vincent and Ahanhanzo, Corneille and Billotte, Norbert}, year={2018}, month=aug } +, + @article{Rouard_2018, title={Three new genome assemblies support a rapid radiation in Musa acuminata (wild banana)}, ISSN={1759-6653}, url={http://dx.doi.org/10.1093/gbe/evy227}, DOI={10.1093/gbe/evy227}, journal={Genome Biology and Evolution}, publisher={Oxford University Press (OUP)}, author={Rouard, M and Droc, G and Martin, G and Sardos, J and Hueber, Y and Guignon, V and Cenci, A and Geigle, B and Hibbins, M S and Yahiaoui, N and Baurens, F-C and Berry, V and Hahn, M W and D’Hont, A and Roux, N}, year={2018}, month=oct } +, + @article{Mieulet_2018, title={Unleashing meiotic crossovers in crops}, volume={4}, ISSN={2055-0278}, url={http://dx.doi.org/10.1038/s41477-018-0311-x}, DOI={10.1038/s41477-018-0311-x}, number={12}, journal={Nature Plants}, publisher={Springer Science and Business Media LLC}, author={Mieulet, Delphine and Aubert, Gregoire and Bres, Cecile and Klein, Anthony and Droc, Gaëtan and Vieille, Emilie and Rond-Coissieux, Celine and Sanchez, Myriam and Dalmais, Marion and Mauxion, Jean-Philippe and Rothan, Christophe and Guiderdoni, Emmanuel and Mercier, Raphael}, year={2018}, month=nov, pages={1010–1016} } +, + @article{Dufayard_2017, title={New Insights on Leucine-Rich Repeats Receptor-Like Kinase Orthologous Relationships in Angiosperms}, volume={08}, ISSN={1664-462X}, url={http://dx.doi.org/10.3389/fpls.2017.00381}, DOI={10.3389/fpls.2017.00381}, journal={Frontiers in Plant Science}, publisher={Frontiers Media SA}, author={Dufayard, Jean-François and Bettembourg, Mathilde and Fischer, Iris and Droc, Gaetan and Guiderdoni, Emmanuel and Périn, Christophe and Chantret, Nathalie and Diévart, Anne}, year={2017}, month=apr } +, + @article{Argout_2017, title={The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies}, volume={18}, ISSN={1471-2164}, url={http://dx.doi.org/10.1186/s12864-017-4120-9}, DOI={10.1186/s12864-017-4120-9}, number={1}, journal={BMC Genomics}, publisher={Springer Science and Business Media LLC}, author={Argout, X. and Martin, G. and Droc, G. and Fouet, O. and Labadie, K. and Rivals, E. and Aury, J.M. and Lanaud, C.}, year={2017}, month=sep } +, + @article{Fischer_2016, title={Evolutionary Dynamics of the Leucine-Rich Repeat Receptor-Like Kinase (LRR-RLK) Subfamily in Angiosperms}, volume={170}, ISSN={1532-2548}, url={http://dx.doi.org/10.1104/pp.15.01470}, DOI={10.1104/pp.15.01470}, number={3}, journal={Plant Physiology}, publisher={Oxford University Press (OUP)}, author={Fischer, Iris and Diévart, Anne and Droc, Gaetan and Dufayard, Jean-François and Chantret, Nathalie}, year={2016}, month=jan, pages={1595–1610} } +, + @article{Martin_2016, title={Improvement of the banana “Musa acuminata” reference sequence using NGS data and semi-automated bioinformatics methods}, volume={17}, ISSN={1471-2164}, url={http://dx.doi.org/10.1186/s12864-016-2579-4}, DOI={10.1186/s12864-016-2579-4}, number={1}, journal={BMC Genomics}, publisher={Springer Science and Business Media LLC}, author={Martin, Guillaume and Baurens, Franc-Christophe and Droc, Gaëtan and Rouard, Mathieu and Cenci, Alberto and Kilian, Andrzej and Hastie, Alex and Doležel, Jaroslav and Aury, Jean-Marc and Alberti, Adriana and Carreel, Françoise and D’Hont, Angélique}, year={2016}, month=mar } +, + @article{Dievart_2016, title={The phenome analysis of mutant alleles in Leucine-Rich Repeat Receptor-Like Kinase genes in rice reveals new potential targets for stress tolerant cereals}, volume={242}, ISSN={0168-9452}, url={http://dx.doi.org/10.1016/j.plantsci.2015.06.019}, DOI={10.1016/j.plantsci.2015.06.019}, journal={Plant Science}, publisher={Elsevier BV}, author={Dievart, Anne and Perin, Christophe and Hirsch, Judith and Bettembourg, Mathilde and Lanau, Nadège and Artus, Florence and Bureau, Charlotte and Noel, Nicolas and Droc, Gaétan and Peyramard, Matthieu and Pereira, Serge and Courtois, Brigitte and Morel, Jean-Benoit and Guiderdoni, Emmanuel}, year={2016}, month=jan, pages={240–249} } +, + @article{2016, volume={7–8}, ISSN={2214-6628}, url={http://dx.doi.org/10.1016/j.cpb.2016.12.002}, DOI={10.1016/j.cpb.2016.12.002}, journal={Current Plant Biology}, publisher={Elsevier BV}, year={2016}, month=nov, pages={6–9} } +, + @article{Mieulet_2016, title={Turning rice meiosis into mitosis}, volume={26}, ISSN={1748-7838}, url={http://dx.doi.org/10.1038/cr.2016.117}, DOI={10.1038/cr.2016.117}, number={11}, journal={Cell Research}, publisher={Springer Science and Business Media LLC}, author={Mieulet, Delphine and Jolivet, Sylvie and Rivard, Maud and Cromer, Laurence and Vernet, Aurore and Mayonove, Pauline and Pereira, Lucie and Droc, Gaëtan and Courtois, Brigitte and Guiderdoni, Emmanuel and Mercier, Raphael}, year={2016}, month=oct, pages={1242–1254} } +, + @article{Dereeper_2014, title={The coffee genome hub: a resource for coffee genomes}, volume={43}, ISSN={0305-1048}, url={http://dx.doi.org/10.1093/nar/gku1108}, DOI={10.1093/nar/gku1108}, number={D1}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Dereeper, Alexis and Bocs, Stéphanie and Rouard, Mathieu and Guignon, Valentin and Ravel, Sébastien and Tranchant-Dubreuil, Christine and Poncet, Valérie and Garsmeur, Olivier and Lashermes, Philippe and Droc, Gaëtan}, year={2014}, month=nov, pages={D1028–D1035} } +, + @article{Doucet_2015, title={U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals}, volume={32}, ISSN={1537-1719}, url={http://dx.doi.org/10.1093/molbev/msv062}, DOI={10.1093/molbev/msv062}, number={7}, journal={Molecular Biology and Evolution}, publisher={Oxford University Press (OUP)}, author={Doucet, Aurélien J. and Droc, Gaëtan and Siol, Oliver and Audoux, Jérôme and Gilbert, Nicolas}, year={2015}, month=mar, pages={1815–1832} } +, + @article{Phung_2014, title={Characterization of a panel of Vietnamese rice varieties using DArT and SNP markers for association mapping purposes}, volume={14}, ISSN={1471-2229}, url={http://dx.doi.org/10.1186/s12870-014-0371-7}, DOI={10.1186/s12870-014-0371-7}, number={1}, journal={BMC Plant Biology}, publisher={Springer Science and Business Media LLC}, author={Phung, Nhung Thi Phuong and Mai, Chung Duc and Mournet, Pierre and Frouin, Julien and Droc, Gaëtan and Ta, Nhung Kim and Jouannic, Stefan and Lê, Loan Thi and Do, Vinh Nang and Gantet, Pascal and Courtois, Brigitte}, year={2014}, month=dec } +, + @article{Denoeud_2014, title={The coffee genome provides insight into the convergent evolution of caffeine biosynthesis}, volume={345}, ISSN={1095-9203}, url={http://dx.doi.org/10.1126/science.1255274}, DOI={10.1126/science.1255274}, number={6201}, journal={Science}, publisher={American Association for the Advancement of Science (AAAS)}, author={Denoeud, France and Carretero-Paulet, Lorenzo and Dereeper, Alexis and Droc, Gaëtan and Guyot, Romain and Pietrella, Marco and Zheng, Chunfang and Alberti, Adriana and Anthony, François and Aprea, Giuseppe and Aury, Jean-Marc and Bento, Pascal and Bernard, Maria and Bocs, Stéphanie and Campa, Claudine and Cenci, Alberto and Combes, Marie-Christine and Crouzillat, Dominique and Da Silva, Corinne and Daddiego, Loretta and De Bellis, Fabien and Dussert, Stéphane and Garsmeur, Olivier and Gayraud, Thomas and Guignon, Valentin and Jahn, Katharina and Jamilloux, Véronique and Joët, Thierry and Labadie, Karine and Lan, Tianying and Leclercq, Julie and Lepelley, Maud and Leroy, Thierry and Li, Lei-Ting and Librado, Pablo and Lopez, Loredana and Muñoz, Adriana and Noel, Benjamin and Pallavicini, Alberto and Perrotta, Gaetano and Poncet, Valérie and Pot, David and Priyono and Rigoreau, Michel and Rouard, Mathieu and Rozas, Julio and Tranchant-Dubreuil, Christine and VanBuren, Robert and Zhang, Qiong and Andrade, Alan C. and Argout, Xavier and Bertrand, Benoît and de Kochko, Alexandre and Graziosi, Giorgio and Henry, Robert J and Jayarama and Ming, Ray and Nagai, Chifumi and Rounsley, Steve and Sankoff, David and Giuliano, Giovanni and Albert, Victor A. and Wincker, Patrick and Lashermes, Philippe}, year={2014}, month=sep, pages={1181–1184} } +, + @article{Coudert_2012, title={ASL/LBD Phylogeny Suggests that Genetic Mechanisms of Root Initiation Downstream of Auxin Are Distinct in Lycophytes and Euphyllophytes}, volume={30}, ISSN={0737-4038}, url={http://dx.doi.org/10.1093/molbev/mss250}, DOI={10.1093/molbev/mss250}, number={3}, journal={Molecular Biology and Evolution}, publisher={Oxford University Press (OUP)}, author={Coudert, Yoan and Dievart, Anne and Droc, Gaetan and Gantet, Pascal}, year={2012}, month=oct, pages={569–572} } +, + @article{Courtois_2013, title={Genome-Wide Association Mapping of Root Traits in a Japonica Rice Panel}, volume={8}, ISSN={1932-6203}, url={http://dx.doi.org/10.1371/journal.pone.0078037}, DOI={10.1371/journal.pone.0078037}, number={11}, journal={PLoS ONE}, publisher={Public Library of Science (PLoS)}, author={Courtois, Brigitte and Audebert, Alain and Dardou, Audrey and Roques, Sandrine and Ghneim- Herrera, Thaura and Droc, Gaëtan and Frouin, Julien and Rouan, Lauriane and Gozé, Eric and Kilian, Andrzej and Ahmadi, Nourollah and Dingkuhn, Michael}, editor={Baxter, Ivan}, year={2013}, month=nov, pages={e78037} } +, + @article{Wei_2013, title={International Consortium of Rice Mutagenesis: resources and beyond}, volume={6}, ISSN={1939-8433}, url={http://dx.doi.org/10.1186/1939-8433-6-39}, DOI={10.1186/1939-8433-6-39}, number={1}, journal={Rice}, publisher={Springer Science and Business Media LLC}, author={Wei, Fu-Jin and Droc, Gaëtan and Guiderdoni, Emmanuel and Hsing, Yue-ie C}, year={2013}, month=dec } +, + @inbook{Droc_2013, title={Mutant Resources for Functional Analysis of the Rice Genome}, ISBN={9781461479031}, url={http://dx.doi.org/10.1007/978-1-4614-7903-1_7}, DOI={10.1007/978-1-4614-7903-1_7}, booktitle={Genetics and Genomics of Rice}, publisher={Springer New York}, author={Droc, Gaëtan and An, Gynheung and Wu, Changyin and Hsing, Yue-ie C. and Hirochika, Hirohiko and Pereira, Andy and Sundaresan, Venkatesan and Han, Chang-Deok and Upadhyaya, Narayana and Ramachandran, Srinivasan and Comai, Luca and Leung, Hei and Guiderdoni, Emmanuel}, year={2013}, pages={81–115} } +, + @inbook{Mieulet_2013, title={Reverse Genetics in Rice Using Tos17}, ISBN={9781627035682}, ISSN={1940-6029}, url={http://dx.doi.org/10.1007/978-1-62703-568-2_15}, DOI={10.1007/978-1-62703-568-2_15}, booktitle={Plant Transposable Elements}, publisher={Humana Press}, author={Mieulet, Delphine and Diévart, Anne and Droc, Gaëtan and Lanau, Nadège and Guiderdoni, Emmanuel}, year={2013}, pages={205–221} } +, + @article{Droc_2013, title={The Banana Genome Hub}, volume={2013}, ISSN={1758-0463}, url={http://dx.doi.org/10.1093/database/bat035}, DOI={10.1093/database/bat035}, journal={Database}, publisher={Oxford University Press (OUP)}, author={Droc, Gaëtan and Larivière, Delphine and Guignon, Valentin and Yahiaoui, Nabila and This, Dominique and Garsmeur, Olivier and Dereeper, Alexis and Hamelin, Chantal and Argout, Xavier and Dufayard, Jean-François and Lengelle, Juliette and Baurens, Franc-Christophe and Cenci, Alberto and Pitollat, Bertrand and D’Hont, Angélique and Ruiz, Manuel and Rouard, Mathieu and Bocs, Stéphanie}, year={2013}, month=jan } +, + @article{Guignon_2012, title={Chado Controller: advanced annotation management with a community annotation system}, volume={28}, ISSN={1367-4803}, url={http://dx.doi.org/10.1093/bioinformatics/bts046}, DOI={10.1093/bioinformatics/bts046}, number={7}, journal={Bioinformatics}, publisher={Oxford University Press (OUP)}, author={Guignon, Valentin and Droc, Gaëtan and Alaux, Michael and Baurens, Franc-Christophe and Garsmeur, Olivier and Poiron, Claire and Carver, Tim and Rouard, Mathieu and Bocs, Stéphanie}, year={2012}, month=jan, pages={1054–1056} } +, + @article{Courtois_2012, title={Genetic Diversity and Population Structure in a European Collection of Rice}, volume={52}, ISSN={1435-0653}, url={http://dx.doi.org/10.2135/cropsci2011.11.0588}, DOI={10.2135/cropsci2011.11.0588}, number={4}, journal={Crop Science}, publisher={Wiley}, author={Courtois, Brigitte and Frouin, Julien and Greco, Raffaella and Bruschi, Gianluca and Droc, Gaëtan and Hamelin, Chantal and Ruiz, Manuel and Clément, Guy and Evrard, Jean‐Charles and van Coppenole, Sylvie and Katsantonis, Dimitrios and Oliveira, Margarida and Negrão, Sónia and Matos, Celina and Cavigiolo, Stefano and Lupotto, Elisabetta and Piffanelli, Pietro and Ahmadi, Nourollah}, year={2012}, month=jul, pages={1663–1675} } +, + @article{Lorieux_2012, title={In‐depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches}, volume={10}, ISSN={1467-7652}, url={http://dx.doi.org/10.1111/j.1467-7652.2012.00689.x}, DOI={10.1111/j.1467-7652.2012.00689.x}, number={5}, journal={Plant Biotechnology Journal}, publisher={Wiley}, author={Lorieux, Mathias and Blein, Mélisande and Lozano, Jaime and Bouniol, Mathieu and Droc, Gaétan and Diévart, Anne and Périn, Christophe and Mieulet, Delphine and Lanau, Nadège and Bès, Martine and Rouvière, Claire and Gay, Céline and Piffanelli, Pietro and Larmande, Pierre and Michel, Corinne and Barnola, Isabelle and Biderre‐Petit, Corinne and Sallaud, Christophe and Perez, Pascual and Bourgis, Fabienne and Ghesquière, Alain and Gantet, Pascal and Tohme, Joe and Morel, Jean Benoit and Guiderdoni, Emmanuel}, year={2012}, month=feb, pages={555–568} } +, + @article{D_Hont_2012, title={The banana (Musa acuminata) genome and the evolution of monocotyledonous plants}, volume={488}, ISSN={1476-4687}, url={http://dx.doi.org/10.1038/nature11241}, DOI={10.1038/nature11241}, number={7410}, journal={Nature}, publisher={Springer Science and Business Media LLC}, author={D’Hont, Angélique and Denoeud, France and Aury, Jean-Marc and Baurens, Franc-Christophe and Carreel, Françoise and Garsmeur, Olivier and Noel, Benjamin and Bocs, Stéphanie and Droc, Gaëtan and Rouard, Mathieu and Da Silva, Corinne and Jabbari, Kamel and Cardi, Céline and Poulain, Julie and Souquet, Marlène and Labadie, Karine and Jourda, Cyril and Lengellé, Juliette and Rodier-Goud, Marguerite and Alberti, Adriana and Bernard, Maria and Correa, Margot and Ayyampalayam, Saravanaraj and Mckain, Michael R. and Leebens-Mack, Jim and Burgess, Diane and Freeling, Mike and Mbéguié-A-Mbéguié, Didier and Chabannes, Matthieu and Wicker, Thomas and Panaud, Olivier and Barbosa, Jose and Hribova, Eva and Heslop-Harrison, Pat and Habas, Rémy and Rivallan, Ronan and Francois, Philippe and Poiron, Claire and Kilian, Andrzej and Burthia, Dheema and Jenny, Christophe and Bakry, Frédéric and Brown, Spencer and Guignon, Valentin and Kema, Gert and Dita, Miguel and Waalwijk, Cees and Joseph, Steeve and Dievart, Anne and Jaillon, Olivier and Leclercq, Julie and Argout, Xavier and Lyons, Eric and Almeida, Ana and Jeridi, Mouna and Dolezel, Jaroslav and Roux, Nicolas and Risterucci, Ange-Marie and Weissenbach, Jean and Ruiz, Manuel and Glaszmann, Jean-Christophe and Quétier, Francis and Yahiaoui, Nabila and Wincker, Patrick}, year={2012}, month=jul, pages={213–217} } +, + @article{Rouard_2010, title={GreenPhylDB v2.0: comparative and functional genomics in plants}, volume={39}, ISSN={1362-4962}, url={http://dx.doi.org/10.1093/nar/gkq811}, DOI={10.1093/nar/gkq811}, number={suppl_1}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Rouard, Mathieu and Guignon, Valentin and Aluome, Christelle and Laporte, Marie-Angélique and Droc, Gaëtan and Walde, Christian and Zmasek, Christian M. and Périn, Christophe and Conte, Matthieu G.}, year={2010}, month=sep, pages={D1095–D1102} } +, + @article{Garsmeur_2010, title={High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane}, volume={189}, ISSN={1469-8137}, url={http://dx.doi.org/10.1111/j.1469-8137.2010.03497.x}, DOI={10.1111/j.1469-8137.2010.03497.x}, number={2}, journal={New Phytologist}, publisher={Wiley}, author={Garsmeur, Olivier and Charron, Carine and Bocs, Stéphanie and Jouffe, Vincent and Samain, Sylvie and Couloux, Arnaud and Droc, Gaëtan and Zini, Cyrille and Glaszmann, Jean‐Christophe and Van Sluys, Marie‐Anne and D’Hont, Angélique}, year={2010}, month=oct, pages={629–642} } +, + @article{Di_vart_2011, title={Leucine-Rich repeat receptor kinases are sporadically distributed in eukaryotic genomes}, volume={11}, ISSN={1471-2148}, url={http://dx.doi.org/10.1186/1471-2148-11-367}, DOI={10.1186/1471-2148-11-367}, number={1}, journal={BMC Evolutionary Biology}, publisher={Springer Science and Business Media LLC}, author={Diévart, Anne and Gilbert, Nicolas and Droc, Gaétan and Attard, Agnès and Gourgues, Matthieu and Guiderdoni, Emmanuel and Périn, Christophe}, year={2011}, pages={367} } +, + @article{Courtois_2011, title={Molecular characterization of the European rice collection in view of association mapping}, volume={9}, ISSN={1479-263X}, url={http://dx.doi.org/10.1017/S147926211100027X}, DOI={10.1017/s147926211100027x}, number={2}, journal={Plant Genetic Resources}, publisher={Cambridge University Press (CUP)}, author={Courtois, Brigitte and Greco, Raffaella and Bruschi, Gianluca and Frouin, Julien and Ahmadi, Nourollah and Droc, Gaëtan and Hamelin, Chantal and Ruiz, Manuel and Evrard, Jean-Charles and Katsantonis, Dimitrios and Oliveira, Margarida and Negrao, Sonia and Cavigiolo, Stefano and Lupotto, Elisabetta and Piffanelli, Pietro}, year={2011}, month=jun, pages={233–235} } +, + @article{Ahmadi_2011, title={Targeted association analysis identified japonica rice varieties achieving Na+/K+ homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra}, volume={123}, ISSN={1432-2242}, url={http://dx.doi.org/10.1007/s00122-011-1634-4}, DOI={10.1007/s00122-011-1634-4}, number={6}, journal={Theoretical and Applied Genetics}, publisher={Springer Science and Business Media LLC}, author={Ahmadi, N. and Negrão, S. and Katsantonis, D. and Frouin, J. and Ploux, J. and Letourmy, P. and Droc, G. and Babo, P. and Trindade, H. and Bruschi, G. and Greco, R. and Oliveira, M. M. and Piffanelli, P. and Courtois, B.}, year={2011}, month=jun, pages={881–895} } +, + @article{Argout_2010, title={The genome of Theobroma cacao}, volume={43}, ISSN={1546-1718}, url={http://dx.doi.org/10.1038/ng.736}, DOI={10.1038/ng.736}, number={2}, journal={Nature Genetics}, publisher={Springer Science and Business Media LLC}, author={Argout, Xavier and Salse, Jerome and Aury, Jean-Marc and Guiltinan, Mark J and Droc, Gaetan and Gouzy, Jerome and Allegre, Mathilde and Chaparro, Cristian and Legavre, Thierry and Maximova, Siela N and Abrouk, Michael and Murat, Florent and Fouet, Olivier and Poulain, Julie and Ruiz, Manuel and Roguet, Yolande and Rodier-Goud, Maguy and Barbosa-Neto, Jose Fernandes and Sabot, Francois and Kudrna, Dave and Ammiraju, Jetty Siva S and Schuster, Stephan C and Carlson, John E and Sallet, Erika and Schiex, Thomas and Dievart, Anne and Kramer, Melissa and Gelley, Laura and Shi, Zi and Bérard, Aurélie and Viot, Christopher and Boccara, Michel and Risterucci, Ange Marie and Guignon, Valentin and Sabau, Xavier and Axtell, Michael J and Ma, Zhaorong and Zhang, Yufan and Brown, Spencer and Bourge, Mickael and Golser, Wolfgang and Song, Xiang and Clement, Didier and Rivallan, Ronan and Tahi, Mathias and Akaza, Joseph Moroh and Pitollat, Bertrand and Gramacho, Karina and D’Hont, Angélique and Brunel, Dominique and Infante, Diogenes and Kebe, Ismael and Costet, Pierre and Wing, Rod and McCombie, W Richard and Guiderdoni, Emmanuel and Quetier, Francis and Panaud, Olivier and Wincker, Patrick and Bocs, Stephanie and Lanaud, Claire}, year={2010}, month=dec, pages={101–108} } +, + @article{Guiltinan_2010,doi = {10.1038/npre.2010.4908.1},url = {http://dx.doi.org/10.1038/npre.2010.4908.1},year = 2010,month = {sep},publisher = {Nature Publishing Group},author = {Mark Guiltinan and Xavier Argout and Jerome Salse and Jean Marc Aury and Gaetan Droc and Jerome Gouzy and Mathilde Allegre and Cristian Chaparro and Thierry Legavre and Mark Guiltinan and Siela Maximova and Michael Abrouk and Florent Murat and Olivier Fouet and Julie Poulain and Manuel Ruiz and Yolande Roguet and Maguy Rodier-Goud and Jose Fernandes Barbosa-Neto and Francois Sabot and Dave Kudrna and Jetty Siva Ammiraju and Stephan Schuster and John Carlson and Erika Sallet and Schiex T. and Anne Dievart and Melissa Kramer and Laura Gelley and Zi Sh and Aur{\'{e}}lie B{\'{e}}rard and Christopher Viot and Michel Boccara and Ange Marie Risterucci and Valentin Guignon and Xavier Sabau and Michael Axtell and Zhaorong Ma and Yufan Zhang and Spencer Brown and Mickael Bourge and Wolfgang Golser and Xiang Song and Didier Clement and Ronan Rivalan and Mathias Tahi and Joseph Moroh Akaza and Bertrand Pitollat and Karina Gramacho and Ang{\'{e}}lique D'Hont and Dominique Brunel and Diogenes Infante and Ismael Kebe and Pierre Costet and Rod Wing and W. Richard McCombie and Emmanuel Guiderdoni and Francis Quetier and Olivier Panaud and Patrick Wincker and Stephanie Sidibe-Bocs and Claire Lanaud},title = {Deciphering the genome structure and paleohistory of Theobroma cacao},journal = {Nature Precedings}} +, + @article{Petit_2009, title={Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus}, volume={282}, ISSN={1617-4623}, url={http://dx.doi.org/10.1007/s00438-009-0493-z}, DOI={10.1007/s00438-009-0493-z}, number={6}, journal={Molecular Genetics and Genomics}, publisher={Springer Science and Business Media LLC}, author={Petit, Julie and Bourgeois, Emmanuelle and Stenger, Wilfried and Bès, Martine and Droc, Gaétan and Meynard, Donaldo and Courtois, Brigitte and Ghesquière, Alain and Sabot, François and Panaud, Olivier and Guiderdoni, Emmanuel}, year={2009}, month=oct, pages={633–652} } +, + @article{Droc_2009, title={OryGenesDB 2008 update: database interoperability for functional genomics of rice}, volume={37}, ISSN={1362-4962}, url={http://dx.doi.org/10.1093/nar/gkn821}, DOI={10.1093/nar/gkn821}, number={Database}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Droc, G. and Perin, C. and Fromentin, S. and Larmande, P.}, year={2009}, month=jan, pages={D992–D995} }