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Welcome to the Gigwa2 wiki!

Latest version may be tested online at https://gigwa.southgreen.fr/

Source code repository for v2.x: https://github.com/SouthGreenPlatform/Gigwa2

v2.8 is available at https://github.com/SouthGreenPlatform/Gigwa2/releases/tag/2.8-RELEASE as of july 2nd, 2024:

Changes in v2.8:

• Changes on BrAPI V2 web services:
  • search/germplasm:
    • fix to return external germplasmDbId into externalReferences
    • return external germplasmName as Gigwa germplasmName if the germplasm was imported from another BrAPI endpoint
    • filter on germplasmNames : look also in external germplasmNames (available for germplasm imported from BrAPI endpoint)
  • search/samples:
    • fix to return external sampleDbId into externalReferences
    • return external sampleName as Gigwa sampleName if the sample was imported from another BrAPI endpoint
    • filter on sampleNames : look also in external sampleNames (available for samples imported from BrAPI endpoint)
  • search/calls & search/allematrix:
    • fix on pagination
    • fix on filtering on variantSets
  • search/callsets:
    • return external sampleDbId into externalReferences if the germplasm was imported from another BrAPI endpoint
    • return external sampleName as Gigwa sampleName if the sample was imported from another BrAPI endpoint
    • in swagger doc, hide filters that are not managed yet
• Quick stats on variant details popup
• Ability to pull sample/individual metadata from BrAPI while importing genotypes
• Added support for importing DArTseq files
• Added MAF distribution chart
• Added "maxQueryThreads_HOST" configuration parameter allowing to tune allocation of MongoDB server resources
• Added support for editing genotypes with SnpClust (based on scatter plots of fluorescence values) via the "snpclustLink" configuration parameter
• Added "enableExperimentalFeatures" configuration parameter
• Implemented Jukes-Cantor neighbour-joining Newick tree export as experimental feature
• Re-added means to paste gene name list
• Provided means to name individual groups
• Added taxon selection dropdown to filter DBs from the navigation bar
• Simplified selection of individuals for charts, gave more flexibility in Fst group design
• Provided means to copy chart's X-avis range to clipboard from hamburger menu (may be pasted at once into any of the position filter fields in main search interface)
• Various bugfixes