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GuilhemSempere edited this page Mar 25, 2020 · 21 revisions

Welcome to the Gigwa2 wiki!

Latest version may be tested online at https://gigwa.southgreen.fr/

Source code repository for v2.x: https://github.com/SouthGreenPlatform/Gigwa2

v2.3-RELEASE webapp and bundles are available for download on Gigwa homepage as of march 25th, 2020:

https://southgreen.fr/content/gigwa

New in v2.3:

  • Added feature to import individual metadata from BrAPI v1 sources (via germplasm + attributes related calls, see documentation for details)
  • Added an experimental BrAPI v2 server implementation
  • Implemented additional BrAPI v1 calls: GET germplasm, GET URL_GERMPLASM_ATTRIBUTES
  • Added Docker containers (see docker-compose.yml)
  • Added an updateGigwa script to bundles, that comes in handy to upgrade the web application without affecting configuration files
  • Added unit tests to make sure not to break query engine when implementing new features
  • Various bugfixes
  • NB1: As of v2.3 the --directoryperdb option is set by default when launching MongoDB. Please refer to https://docs.mongodb.com/manual/reference/configuration-options/#storage.directoryPerDB if you need to migrate existing data (alternatively, you may disable that option in docker-compose.yml for Docker or in the startGigwa script for bundles)
  • NB2: As of v2.3, in bundles, tomcat and mongodb binaries' folders are named just "tomcat" and "mongodb" (no more version numbers). This will help keep startGigwa / stopGigwa scripts consistent across future releases.

v2.2-RELEASE webapp and bundles are available for download on Gigwa homepage as of july 15th, 2019:

http://southgreen.fr/content/gigwa

v2.2 provides much faster hapmap import and allows any authentified user to add his own metadata! By upgrading MongoDB version from 4.0.4 to 4.0.10, it also becomes compatible with curl4

v2.1-RELEASE webapp and bundles are available for download on Gigwa homepage as of may 17th, 2019:

http://southgreen.fr/content/gigwa

v2.1 fixes various bugs and features a query-bookmarking functionality! It also allows to define import and export size limits more conveniently (refer to maxImportSize and maxSearchableBillionGenotypes properties in the docs: for both of them a default setting may now be used in conjunction with settings specific to each user)

v2.0-RELEASE webapp is available for download on Gigwa homepage as of february 27th, 2019:

http://southgreen.fr/content/gigwa

Because of modifications in the data structure, v2 is incompatible with data imported using previous versions

v2 is faster, more robust, and adds lots of new functionalities. Documentation is now embedded in the web-application

Gigwa v1 wiki is available at https://github.com/SouthGreenPlatform/gigwa/wiki

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