From ae4c9e35729454f73b122dbdbb0252d0492f2084 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Shixiang=20Wang=20=28=E7=8E=8B=E8=AF=97=E7=BF=94=29?= Date: Wed, 17 Apr 2024 23:39:49 +0800 Subject: [PATCH] Update README.md Add seqz and facets to readme --- README.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/README.md b/README.md index 7ef632d..bb34af0 100644 --- a/README.md +++ b/README.md @@ -55,6 +55,10 @@ remotes::install_github("ShixiangWang/ascat@v3-for-gcap-v1", subdir = "ASCAT") > updates in processing your data, please refer to for generating the required > allele-specific copy number data, and refer to [`?gcap.ASCNworkflow()`](https://shixiangwang.github.io/gcap/reference/gcap.ASCNworkflow.html) for downstream analysis. +### Alternatives to ASCAT + +For the latest version of GCAP, [sequenza](https://shixiangwang.github.io/gcap/reference/gcap.workflow.seqz.html) or [facets](https://shixiangwang.github.io/gcap/reference/gcap.workflow.facets.html) are supported for preprocessing the bam data, please refer to the provided links for usage. + ### Install GCAP (required) Install **gcap** in R console: