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DESCRIPTION
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Package: CellBench
Type: Package
Title: Construct Benchmarks for Single Cell Analysis Methods
Version: 1.17.1
Authors@R: c(
person("Shian", "Su", email = "[email protected]", role = c("cre", "aut")),
person("Saskia", "Freytag", role = "aut"),
person("Luyi", "Tian", role = "aut"),
person("Xueyi", "Dong", role = "aut"),
person("Matthew", "Ritchie", role = "aut"),
person("Peter", "Hickey", role = "ctb"),
person("Stuart", "Lee", role = "ctb"))
Description: This package contains infrastructure for benchmarking analysis
methods and access to single cell mixture benchmarking data. It provides
a framework for organising analysis methods and testing combinations of
methods in a pipeline without explicitly laying out each combination. It
also provides utilities for sampling and filtering SingleCellExperiment
objects, constructing lists of functions with varying parameters, and
multithreaded evaluation of analysis methods.
biocViews:
Software,
Infrastructure,
SingleCell
URL: https://github.com/shians/cellbench
BugReports: https://github.com/Shians/CellBench/issues
License: GPL-3
Encoding: UTF-8
Depends:
R (>= 3.6),
SingleCellExperiment,
magrittr,
methods,
stats,
tibble,
utils
Imports:
assertthat,
BiocGenerics,
BiocFileCache,
BiocParallel,
dplyr,
rlang,
glue,
memoise,
purrr (>= 0.3.0),
rappdirs,
tidyr,
tidyselect,
lubridate
Suggests:
BiocStyle,
covr,
knitr,
rmarkdown,
testthat,
limma,
ggplot2
VignetteBuilder: knitr
RoxygenNote: 7.2.3