Dockerfile-simba

FROM continuumio/miniconda3

# name your environment and choose python 3.x version
ARG conda_env=simba

# Install system packages
RUN apt-get --allow-releaseinfo-change update && \
    apt-get update && \
    apt-get install -y \
    build-essential \
    libnss3-tools \
    libx11-xcb-dev \
    libxss1 \
    libxcomposite-dev \
    libatk1.0-0 \
    libgtk2.0-0 \
    libxcomposite1 \
    graphviz \
    ffmpeg \
    x11-xserver-utils

RUN mkdir /app
WORKDIR /app

# Make RUN commands use `bash --login`:
SHELL ["/bin/bash", "--login", "-c"]

# Create the environment:
COPY env-simba.yml .
RUN conda env create -f env-simba.yml

# Initialize conda in bash config fiiles:
RUN conda init bash

# Activate the environment, and make sure it's activated:
RUN echo "conda init bash" >> ~/.bashrc
RUN echo "conda activate simba" >> ~/.bashrc
RUN echo "Make sure conda python3.6 is installed:"

# Make RUN commands use the new environment:
SHELL ["conda", "run", "-n", "simba", "/bin/bash", "-c"]

# Upgrade pip
RUN pip install --upgrade pip


RUN conda update -n base -c defaults conda
RUN conda install -c anaconda wxpython
RUN pip install simba-uw-no-tf
RUN conda install -c conda-forge shapely
RUN conda install tensorflow
ADD requirements.txt /app/
RUN pip install --no-cache-dir -r requirements.txt

# prepend conda environment to path
ENV PATH $CONDA_DIR/envs/${conda_env}/bin:$PATH

# if you want this environment to be the default one, uncomment the following line:
ENV CONDA_DEFAULT_ENV ${conda_env}