Dockerfile-deep

FROM continuumio/miniconda3

# name your environment and choose python 3.x version
ARG conda_env=deep


# Install system packages

# https://askubuntu.com/questions/1073145/how-to-install-wxpython-4-ubuntu-18-04
# https://github.com/wxWidgets/Phoenix/blob/master/README.rst#prerequisites

RUN apt-get --allow-releaseinfo-change update && \
    apt-get update && \
    apt-get install -y \
    dpkg-dev \
    build-essential \
    python3.7-dev \
    libpython3.7-dev \
    freeglut3-dev \
    libgl1-mesa-dev \
    libglu1-mesa-dev \
    libgstreamer-plugins-base1.0-dev \
    libgtk-3-dev \
    libjpeg-dev \
    libnotify-dev \
    libpng-dev \
    libsdl2-dev \
    libsm-dev \
    libtiff-dev \
    libwebkit2gtk-4.0-dev \
    libxtst-dev \
    python-wxgtk3.0 \
    libgtk2.0-0

RUN mkdir /app
WORKDIR /app

# Make RUN commands use `bash --login`:
SHELL ["/bin/bash", "--login", "-c"]

# Create the environment:
COPY DLC-CPU.yaml .
RUN conda env create -f DLC-CPU.yaml

# Initialize conda in bash config fiiles:
RUN conda init bash

# Update conda
RUN conda update conda

# Activate the environment, and make sure it's activated:
RUN echo "conda init bash" >> ~/.bashrc
RUN echo "conda activate DLC-CPU" >> ~/.bashrc
RUN echo "Make sure conda python3.6 is installed:"

# Make RUN commands use the new environment:
SHELL ["conda", "run", "-n", "DLC-CPU", "/bin/bash", "-c"]

# Upgrade pip
# RUN pip install --upgrade pip
#RUN conda install cudatoolkit=11.1 -c conda-forge
RUN pip install deeplabcut[gui]==2.2rc3
# RUN conda install -U wxPython