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<!DOCTYPE html>
<html lang="en">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta charset="UTF-8">
<title>SeqWare » Home</title>
<meta content="nanoc 3.7.1" name="generator">
<link href="assets/style-v17.css" media="screen" rel="stylesheet" type="text/css">
<link href="http://feeds.feedburner.com/seqware" rel="alternate" title="The SeqWare Blog" type="application/atom+xml">
<script type="text/javascript"> var _gaq = _gaq || []; _gaq.push(['_setAccount', 'UA-34523087-1']); _gaq.push(['_trackPageview']); (function() { var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true; ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js'; var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s); })(); </script><a href="https://github.com/organizations/SeqWare"><img style="position: absolute; top: 0; right: 0; border: 0;" src="https://s3.amazonaws.com/github/ribbons/forkme_right_green_007200.png" alt="Fork me on GitHub"></a>
</head>
<body>
<div class="wrapper">
<!-- ***** navigation ***** -->
<div class="nav">
<ol>
<li><span class="active" title="You're here."><span>Home</span></span></li>
<li><a href="blog/"><span>News</span></a></li>
<li><a href="docs/"><span>Documentation</span></a></li>
<li><a href="community/"><span>Community</span></a></li>
<li><a href="partners/"><span>Partners</span></a></li>
<li><a href="about/"><span>About</span></a></li>
</ol>
</div>
<!-- ***** sidebar ***** -->
<div class="side">
<div class="section odd">
<a class="twitter-timeline" href="https://twitter.com/SeqWare" data-widget-id="346665526510096385">Tweets by @SeqWare</a> <script>!function(d,s,id){var js,fjs=d.getElementsByTagName(s)[0],p=/^http:/.test(d.location)?'http':'https';if(!d.getElementById(id)){js=d.createElement(s);js.id=id;js.src=p+"://platform.twitter.com/widgets.js";fjs.parentNode.insertBefore(js,fjs);}}(document,"script","twitter-wjs");</script>
</div>
<div class="section even">
<p>The current version of SeqWare is 1.1.1, released on May 1st, 2015. See the <a href="release-notes/">release notes</a> for details.</p>
</div>
</div>
<!-- ***** body ***** -->
<div class="body">
<div id="intro">
<h1><img src="assets/images/seqware_logo.png" alt="SeqWare Logo"></h1>
<h1>Next-Generation Sequencing Analysis on the Grid and in the Cloud</h1>
<p>The open source SeqWare project is a portable software
infrastructure designed to analyze massive genomics datasets produced by
contemporary and emerging technologies, in particular Next Generation
Sequencing (NGS) platforms. It consists of a comprehensive suite of
infrastructure tools focused on enabling the end-to-end analysis of sequence
data – from from raw base calling to analyzed variants ready for
interpretation by users. See the ”<a href="about/">About SeqWare</a>” and the ”<a href="docs/1-introduction/">Introduction to SeqWare</a>” documents for more details.
The ”<a href="docs/">Documentation</a>” pages show how to install and use
SeqWare. In particular, we recommend new users begin with the three getting
started guide found in the documentation section and linked to below.</p>
<p>
Developers can reach the GitHub site ”<a href="https://github.com/SeqWare/seqware">here</a>”.
</p>
<table>
<tr>
<th><h2><strong>Users</strong></h2></th>
<th><h2><strong>Developers</strong></h2></th>
<th><h2><strong>Admins</strong></h2></th>
</tr>
<tr>
<td><a href="docs/3-getting-started/user-tutorial/"><img src="assets/images/genome-capable_ico.png"></a></td>
<td><a href="docs/3-getting-started/developer-tutorial/"><img src="assets/images/open-source_ico.png"></a></td>
<td><a href="docs/3-getting-started/admin-tutorial/"><img src="assets/images/cloud-based_ico.png"></a></td>
</tr>
</table>
</div>
</div>
</div>
<!-- ***** footer ***** -->
<div id="footer">
<p>SeqWare © 2007–2014 Brian O’Connor. SeqWare is released under the a <a rel="license" href="http://www.gnu.org/licenses/licenses.html">GNU GPL v3</a>. This site is built using the excellent <a href="http://nanoc.ws/">nanoc</a> tool and example site along with the <a href="http://www.fonts.info/info/press/free-fonts-for-font-face-embedding.htm">Graublau</a> and <a href="https://en.wikipedia.org/wiki/Gentium">Gentium</a> fonts.</p>
</div>
</body>
</html>