Dockerfile_MTUQ

FROM jupyter/minimal-notebook

LABEL maintainer="Ian Wang"

USER root

RUN apt-get update
RUN apt-get install -y wget ssh less build-essential gfortran gdb vim nano && rm -rf /var/lib/apt/lists/*

USER jovyan

RUN conda config --prepend channels conda-forge \
    && conda install obspy \
    && conda install -c conda-forge pygmt \
    && conda install xarray \
    && conda install cartopy \
    && conda install mpi4py \
    && conda clean -afy

RUN mkdir /home/jovyan/scoped \
    && cd /home/jovyan/scoped \
    && git clone --depth=1 https://github.com/uafgeotools/mtuq.git \
    && cd mtuq \
    && pip install -e . \
    && bash ./data/examples/unpack.bash

RUN cd /home/jovyan/scoped \
    && git clone https://github.com/thurinj/mtuq_workshop_2022.git

RUN cd /home/jovyan/scoped \
    && git clone --depth=1 https://github.com/uafgeotools/pysep.git

RUN cd /home/jovyan/scoped \
    && mkdir -p fk_src \
    && cd fk_src/ \
    && wget https://www.eas.slu.edu/People/LZhu/downloads/fk3.3.tar -O fk3.3.tar \
    && tar -xvf fk3.3.tar \
    && cd fk/ \
    && wget https://www.physics.utoronto.ca/~liuqy/temp/fk-20220331.patch -O fk-20220331.patch \
    && patch < fk-20220331.patch \
    && make \
    && mkdir bin \
    && cp fk syn st_fk trav sachd fk2mt fk.pl bin/

ENV PATH="/home/jovyan/scoped/fk_src/fk/bin:${PATH}"
ARG PATH="/home/jovyan/scoped/fk_src/fk/bin:${PATH}"